Evidence map›Paper›PMID 22203606›Full record

ArticleAntimicrobial agents and chemotherapy2012

In vitro characterization of the activity of PF-05095808, a novel biological agent for hepatitis C virus therapy.

Helen Lavender, Kevin Brady, Frances Burden, Oona Delpuech-Adams, Hubert Denise, Amy Palmer, Hannah Perkins, Boris Savic, Sarah Scott, Caroline Smith-Burchnell and 4 more

Open access · bronzeAbstract read
In one paragraph

Article in Antimicrobial agents and chemotherapy, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.2field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Safe, long-term hepatic expression of anti-HCV shRNA in a nonhuman primate model.Molecular therapy : the journal of the American Society of Gene Therapy · 2012
    Article
  7. All for one, one for all: new combinatorial RNAi therapies combat hepatitis C virus evolution.Molecular therapy : the journal of the American Society of Gene Therapy · 2012
    Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 3 institutions in 2 countries.

Helen LavenderPfizer Global Research and Development, Sandwich, Kent, United Kingdom. Helenblavender@gmail.com
Kevin Brady
Frances Burden
Oona Delpuech-Adams
Hubert Denise
Amy Palmer
Hannah Perkins
Boris Savic
Sarah Scott
Caroline Smith-Burchnell
Phil Troke
J Fraser Wright
David Suhy
Romu Corbau
Pfizer (United Kingdom) · GBPfizer (United States) · USChildren's Hospital of Philadelphia · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

PF-05095808 is a novel biological agent for chronic hepatitis C virus (HCV) therapy. It comprises a recombinant adeno-associated virus (AAV) DNA vector packaged into an AAV serotype 8 capsid. The vector directs expression of three short hairpin RNAs (shRNAs) targeted to conserved regions of the HCV genome. These shRNAs are processed by the host cell into the small interfering RNAs which mediate sequence-specific cleavage of target regions. For small-molecule inhibitors the key screens needed to assess in vitro activity are well defined; we developed new assays to assess this RNA interference agent and so to understand its therapeutic potential. Following administration of PF-05095808 or corresponding synthetic shRNAs, sequence-specific antiviral activity was observed in HCV replicon and infectious virus systems. To quantify the numbers of shRNA molecules required for antiviral activity in vitro and potentially also in vivo, a universal quantitative PCR (qPCR) assay was developed. The number of shRNA molecules needed to drive antiviral activity proved to be independent of the vector delivery system used for PF-05095808 administration. The emergence of resistant variants at the target site of one shRNA was characterized. A novel RNA cleavage assay was developed to confirm the spectrum of activity of PF-05095808 against common HCV clinical isolates. In summary, our data both support antiviral activity consistent with an RNA interference mechanism and demonstrate the potential of PF-05095808 as a therapeutic agent for chronic HCV infection.

Indexed as

Genetic TherapyBase SequenceBiological AssayCapsidCell Line, TumorDependovirusDrug Resistance, ViralGenes, ReporterGenetic VectorsGenome, ViralHepacivirusHepatitis C, ChronicHumansLuciferasesMolecular Sequence DataPolymerase Chain ReactionLuciferasesRNA, Small Interfering

Identifiers

PMID22203606
PMCPMC3294929
OpenAlexW2005709927

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.