Evidence map›Paper›PMID 22201164›Full record

ArticlePhilosophical transactions of the Royal Society of London. Series B, Biological sciences2012

Genomic islands of divergence in hybridizing Heliconius butterflies identified by large-scale targeted sequencing.

Nicola J Nadeau, Annabel Whibley, Robert T Jones, John W Davey, Kanchon K Dasmahapatra, Simon W Baxter, Michael A Quail, Mathieu Joron, Richard H ffrench-Constant, Mark L Blaxter and 2 more

Abstract read
In one paragraph

Article in Philosophical transactions of the Royal Society of London. Series B, Biological sciences, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 124 papers.

0numbers the graph read from it
0cells of the map it votes in
124citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

124 citing papers in PubMed.

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  15. Genomic changes underlying repeated niche shifts in an adaptive radiation.Evolution; international journal of organic evolution · 2022
    Article
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  19. Genomic islands of differentiation in a rapid avian radiation have been driven by recent selective sweeps.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  20. Article

64 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Nicola J NadeauDepartment of Zoology, University of Cambridge, Cambridge CB2 3EJ, UK. njn27@cam.ac.uk
Annabel Whibley
Robert T Jones
John W Davey
Kanchon K Dasmahapatra
Simon W Baxter
Michael A Quail
Mathieu Joron
Richard H ffrench-Constant
Mark L Blaxter
James Mallet
Chris D Jiggins

Funding

Biotechnology and Biological Sciences Research Council BB/E006191/1Biotechnology and Biological Sciences Research Council BB/E008836/1Biotechnology and Biological Sciences Research Council BB/G00661X/1Biotechnology and Biological Sciences Research Council BB/G006903/1Biotechnology and Biological Sciences Research Council BB/G008841/1Biotechnology and Biological Sciences Research Council BB/H014268/1Biotechnology and Biological Sciences Research Council BB/H014357/1Medical Research Council G0900740Wellcome Trust 095831
6 · The paper itself

Abstract

Heliconius butterflies represent a recent radiation of species, in which wing pattern divergence has been implicated in speciation. Several loci that control wing pattern phenotypes have been mapped and two were identified through sequencing. These same gene regions play a role in adaptation across the whole Heliconius radiation. Previous studies of population genetic patterns at these regions have sequenced small amplicons. Here, we use targeted next-generation sequence capture to survey patterns of divergence across these entire regions in divergent geographical races and species of Heliconius. This technique was successful both within and between species for obtaining high coverage of almost all coding regions and sufficient coverage of non-coding regions to perform population genetic analyses. We find major peaks of elevated population differentiation between races across hybrid zones, which indicate regions under strong divergent selection. These 'islands' of divergence appear to be more extensive between closely related species, but there is less clear evidence for such islands between more distantly related species at two further points along the 'speciation continuum'. We also sequence fosmid clones across these regions in different Heliconius melpomene races. We find no major structural rearrangements but many relatively large (greater than 1 kb) insertion/deletion events (including gain/loss of transposable elements) that are variable between races.

Indexed as

Genetic VariationGenome, InsectGenomic IslandsAdaptation, BiologicalAnimalsBase SequenceButterfliesChromosomes, InsectGenes, InsectGenetic LociGenetic SpeciationGenetics, PopulationMolecular MimicryMolecular Sequence DataPhylogenySequence Analysis, DNA

Identifiers

PMID22201164
PMCPMC3233711

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.