Evidence map›Paper›PMID 22200565›Full record

ArticleJournal of magnetic resonance (San Diego, Calif. : 1997)2012

Deterministic schedules for robust and reproducible non-uniform sampling in multidimensional NMR.

Matthew T Eddy, David Ruben, Robert G Griffin, Judith Herzfeld

Abstract read
In one paragraph

Article in Journal of magnetic resonance (San Diego, Calif. : 1997), 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Article
  2. Non-Uniform Sampling for Quantitative NOESY.Magnetic resonance in chemistry : MRC · 2025
    Article
  3. Evaluating metrics of spectral quality in nonuniform sampling.Journal of magnetic resonance open · 2025
    Article
  4. High fidelity sampling schedules for NMR spectra of high dynamic range.Journal of magnetic resonance (San Diego, Calif. : 1997) · 2022
    Article
  5. Article
  6. Article
  7. Subrandom methods for multidimensional nonuniform sampling.Journal of magnetic resonance (San Diego, Calif. : 1997) · 2016
    Article
  8. Deterministic multidimensional nonuniform gap sampling.Journal of magnetic resonance (San Diego, Calif. : 1997) · 2015
    Article
  9. Accurate scoring of non-uniform sampling schemes for quantitative NMR.Journal of magnetic resonance (San Diego, Calif. : 1997) · 2014
    Article
  10. Article
  11. Sampling scheme and compressed sensing applied to solid-state NMR spectroscopy.Journal of magnetic resonance (San Diego, Calif. : 1997) · 2013
    Article
  12. Article
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Matthew T EddyDepartment of Chemistry, Massachusetts Institute of Technology, Cambridge, MA 02139, USA. meddy@mit.edu
David Ruben
Robert G Griffin
Judith Herzfeld

Funding

OverallP41EB002026 · NIBIB · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI GRIFFIN, ROBERT GUY · 2003 to 2018
$17.9M
Solid State NMR Studies of Peptides and ProteinsR01EB003151 · NIBIB · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI GRIFFIN, ROBERT GUY · 2004 to 2015
$6.5M
Solid State NMR Studies of Membrane ProteinsR01EB001960 · NIBIB · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI GRIFFIN, ROBERT GUY · 2003 to 2017
$6.5M
NMR STUDIES OF BIOLOGICAL MEMBRANESR01EB001035 · NIBIB · BRANDEIS UNIVERSITY · PI HERZFELD, JUDITH · 2003 to 2012
$2.9M
NIBIB NIH HHS EB001035NIBIB NIH HHS EB001960NIBIB NIH HHS EB002026NIBIB NIH HHS EB003151NIBIB NIH HHS P41 EB002026NIBIB NIH HHS R01 EB001035NIBIB NIH HHS R01 EB001960NIBIB NIH HHS R01 EB003151
6 · The paper itself

Abstract

We show that a simple, general, and easily reproducible method for generating non-uniform sampling (NUS) schedules preserves the benefits of random sampling, including inherently reduced sampling artifacts, while removing the pitfalls associated with choosing an arbitrary seed. Sampling schedules are generated from a discrete cumulative distribution function (CDF) that closely fits the continuous CDF of the desired probability density function. We compare random and deterministic sampling using a Gaussian probability density function applied to 2D HSQC spectra. Data are processed using the previously published method of Spectroscopy by Integration of Frequency and Time domain data (SIFT). NUS spectra from deterministic sampling schedules were found to be at least as good as those from random schedules at the SIFT critical sampling density, and significantly better at half that sampling density. The method can be applied to any probability density function and generalized to greater than two dimensions.

Indexed as

ArtifactsModels, ChemicalModels, MolecularComputer SimulationData Interpretation, StatisticalMagnetic Resonance SpectroscopyModels, StatisticalSample Size

Identifiers

PMID22200565
PMCPMC3257378

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.