Evidence map›Paper›PMID 22199242›Full record

ArticleInvestigative ophthalmology & visual science2012

Analysis of the role of ZEB1 in the pathogenesis of posterior polymorphous corneal dystrophy.

Vivek S Yellore, Sylvia A Rayner, Catherine K Nguyen, Rajendra K Gangalum, Zhe Jing, Suraj P Bhat, Anthony J Aldave

Open access · bronzeAbstract read
In one paragraph

Article in Investigative ophthalmology & visual science, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed, 1 pooled it
2.6field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 1 synthesis or guideline pooled it, 19 citations in OpenAlex.

  1. Pooled it
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  3. Review
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. The genetics of Fuchs' corneal dystrophy.Expert review of ophthalmology · 2012
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Vivek S YelloreJules Stein Eye Institute, David Geffen School of Medicine at the University of California, Los Angeles, California, USA.
Sylvia A Rayner
Catherine K Nguyen
Rajendra K Gangalum
Zhe Jing
Suraj P Bhat
Anthony J Aldave
University of California, Los Angeles · US

Funding

GENE EXPRESSION IN THE NORMAL AND CATARACTOUS LENSR01EY006044 · NEI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI BHAT, SURAJ P · 1985 to 2010
$4.4M
Cloning/Gene/Posterior Polymorphous corneal dystrophyK08EY016079 · NEI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI ALDAVE, ANTHONY JOHN · 2005 to 2009
$997k
NEI NIH HHS K08 EY016079NEI NIH HHS R01 EY006044
6 · The paper itself

Abstract

purposeTo determine how nonsense mutations in the transcription factor ZEB1 lead to the development of posterior polymorphous corneal dystrophy type 3 (PPCD3).

methodsWhole-cell extracts were obtained from cultured human corneal epithelial cells (HCEpCs) as a source of ZEB1 protein. DNA-binding assays were performed using the whole-cell extract and oligonucleotide probes consisting of the two conserved E2-box motifs and surrounding nucleotides upstream of COL4A3. ZEB1 and COL4A3 mRNA expression in primary human corneal endothelial cells (HCEnCs) was assayed in both PPCD3 and control corneas by RT-PCR. Immunohistochemistry was used to localize ZEB1 and COL4A3 expression in normal human cornea.

resultsElectromobility shift assays (EMSAs) and competition EMSAs demonstrated binding of protein(s) in the cultured HCEpCs to the E2-box motifs in the probes. The supershift EMSA confirmed that ZEB1, demonstrated to be present in the whole-cell extracts, binds to both the proximal and distal E2-box motifs in the COL4A3 promoter region. Both COL4A3 and ZEB1 are expressed in normal HCEnCs, although in PPCD3, ZEB1 expression is decreased and COL4A3 expression is increased compared with levels of both genes in healthy control corneas.

conclusionsInversely related HCEnC expression levels of ZEB1 and COL4A3 in PPCD3 indicate that ZEB1-mediated alterations in COL4A3 expression are most likely associated with the pathogenesis of this corneal endothelial dystrophy. However, the demonstration of COL4A3 expression in healthy adult primary HCEnCs suggests that PPCD3 is more likely to involve an alteration in the timing and/or degree of COL4A3 expression than to result from the dichotomous change implied by the previously proposed ectopic expression model.

Indexed as

Codon, NonsenseAdultAgedAutoantigensBlotting, WesternCells, CulturedCollagen Type IVCorneal Dystrophies, HereditaryElectrophoretic Mobility Shift AssayEndothelium, CornealEpithelium, CornealFluorescent Antibody Technique, IndirectGene Expression RegulationHomeodomain ProteinsHumansMiddle AgedAutoantigensCodon, NonsenseCollagen Type IVHomeodomain ProteinsOligonucleotide ProbesRNA, MessengerTranscription Factorstype IV collagen alpha3 chainZEB1 protein, humanZinc Finger E-box-Binding Homeobox 1

Identifiers

PMID22199242
PMCPMC3292363
OpenAlexW1986013142

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.