Evidence map›Paper›PMID 22197932›Full record

SynthesisNature genetics2011

Meta-analysis of genome-wide association studies identifies three new risk loci for atopic dermatitis.

Lavinia Paternoster, Marie Standl, Chih-Mei Chen, Adaikalavan Ramasamy, Klaus Bønnelykke, Liesbeth Duijts, Manuel A Ferreira, Alexessander Couto Alves, Jacob P Thyssen, Eva Albrecht and 102 more

2 registry-linked trialsOpen access · bronzeAbstract readMeta-Analysis
In one paragraph

Synthesis in Nature genetics, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to 2 registered trials, which are not on this map. Cited by 154 papers, 12 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
154citing papers in PubMed, 12 pooled it
31.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT02233127 completednot on this mapstarted 2014, after this paper: background citation

A Longitudinal Birth Cohort Study in Rahimyar Khan, Pakistan

TypeobservationalSponsorThe Hospital for Sick ChildrenRan2014 to 2016Enrolled2,271ConditionsChild Mortality, Child Morbidity, Child Development, Child Behaviour
NCT02448615 completednot on this mapstarted 2015, after this paper: background citation

A Longitudinal Birth Cohort Study in Coast Province, Kenya

TypeobservationalSponsorThe Hospital for Sick ChildrenRan2015 to 2016Enrolled283ConditionsMortality, Morbidity, Child Development, Child Behaviour
3 · Its place in the literature

Who cites it

154 citing papers in PubMed, 12 syntheses or guidelines pooled it, 345 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Pooled it
  4. Pooled it
  5. Pooled it
  6. Pooled it
  7. Pooled it
  8. Pooled it
  9. Psychological and educational interventions for atopic eczema in children.The Cochrane database of systematic reviews · 2014
    Pooled it
  10. Pooled it
  11. Pooled it
  12. Pooled it
  13. Trial
  14. Identification of two early life eczema and non-eczema phenotypes with high risk for asthma development.Clinical and experimental allergy : journal of the British Society for Allergy and Clinical Immunology · 2019
    Trial
  15. Trial
  16. Trial
  17. Article
  18. Article
  19. Article
  20. Article

94 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

112 authors at 20 institutions in 12 countries.

Lavinia PaternosterMedical Research Council Centre for Causal Analyses in Translational Epidemiology, University of Bristol, Bristol, UK.
Marie Standl
Chih-Mei Chen
Adaikalavan Ramasamy
Klaus Bønnelykke
Liesbeth Duijts
Manuel A Ferreira
Alexessander Couto Alves
Jacob P Thyssen
Eva Albrecht
Hansjörg Baurecht
Bjarke Feenstra
Patrick M A Sleiman
Pirro Hysi
Nicole M Warrington
Ivan Curjuric
Ronny Myhre
John A Curtin
Maria M Groen-Blokhuis
Marjan Kerkhof
Annika Sääf
Andre Franke
David Ellinghaus
Regina Fölster-Holst
Emmanouil Dermitzakis
Stephen B Montgomery
Holger Prokisch
Katharina Heim
Anna-Liisa Hartikainen
Anneli Pouta
Juha Pekkanen
Alexandra I F Blakemore
Jessica L Buxton
Marika Kaakinen
David L Duffy
Pamela A Madden
Andrew C Heath
Grant W Montgomery
Philip J Thompson
Melanie C Matheson
Peter Le Souëf
Australian Asthma Genetics Consortium (AAGC)
Beate St Pourcain
George Davey Smith
John Henderson
John P Kemp
Nicholas J Timpson
Panos Deloukas
Susan M Ring
H-Erich Wichmann
Martina Müller-Nurasyid
Natalija Novak
Norman Klopp
Elke Rodríguez
Wendy McArdle
Allan Linneberg
Torkil Menné
Ellen A Nohr
Albert Hofman
André G Uitterlinden
Cornélia M van Duijn
Fernando Rivadeneira
Johan C de Jongste
Ralf J P van der Valk
Matthias Wjst
Rain Jogi
Frank Geller
Heather A Boyd
Jeffrey C Murray
Cecilia Kim
Frank Mentch
Michael March
Massimo Mangino
Tim D Spector
Veronique Bataille
Craig E Pennell
Patrick G Holt
Peter Sly
Carla M T Tiesler
Elisabeth Thiering
Thomas Illig
Medea Imboden
Wenche Nystad
Angela Simpson
Jouke-Jan Hottenga
Dirkje Postma
Gerard H Koppelman
Henriette A Smit
Cilla Söderhäll
Bo Chawes
Eskil Kreiner-Møller
Hans Bisgaard
Erik Melén
Dorret I Boomsma
Adnan Custovic
Bo Jacobsson
Nicole M Probst-Hensch
Lyle J Palmer
Daniel Glass
Hakon Hakonarson
Mads Melbye
Deborah L Jarvis
Vincent W V Jaddoe
Christian Gieger
Genetics of Overweight Young Adults (GOYA) Consortium
David P Strachan
Nicholas G Martin
Marjo-Riitta Jarvelin
Joachim Heinrich
David M Evans
Stephan Weidinger
EArly Genetics & Lifecourse Epidemiology (EAGLE) Consortium
Helmholtz Zentrum München · DEErasmus MC · NLUniversity of Bristol · GBKing's College London · GBChildren's Hospital of Philadelphia · USImperial College London · GBQIMR Berghofer Medical Research Institute · AUStatens Serum Institut · DKFinnish Institute for Health and Welfare · FINorwegian Institute of Public Health · NOUniversity of Copenhagen · DKVrije Universiteit Amsterdam · NLCopenhagen Prospective Studies on Asthma in Childhood · DKKarolinska Institutet · SEKiel University · DEMedical Research Council · GBMedizinische Hochschule Hannover · DENational Health Service · GBUniversity of Basel · CHUniversity of Groningen · NL

Funding

THE GENETICS OF VULNERABILITY TO NICOTINE ADDICTIONSR01DA012854 · NIDA · WASHINGTON UNIVERSITY · PI MADDEN, PAMELA ANN · 2000 to 2013
$10.4M
GENE-ENVIRONMENT INTERPLAY IN ALCOHOLISMK05AA017688 · NIAAA · WASHINGTON UNIVERSITY · PI HEATH, ANDREW C. · 2008 to 2017
$1.9M
Medical Research Council G0401540Medical Research Council G0601361Medical Research Council G0601361(80219)Medical Research Council G0800582Medical Research Council G0800582(86758)Medical Research Council G9815508Medical Research Council G9815508(74882)NIAAA NIH HHS K05 AA017688NIDA NIH HHS R01 DA012854Wellcome Trust 068545Wellcome Trust 076467Wellcome Trust 084762Wellcome Trust 092731
6 · The paper itself

Abstract

Atopic dermatitis (AD) is a commonly occurring chronic skin disease with high heritability. Apart from filaggrin (FLG), the genes influencing atopic dermatitis are largely unknown. We conducted a genome-wide association meta-analysis of 5,606 affected individuals and 20,565 controls from 16 population-based cohorts and then examined the ten most strongly associated new susceptibility loci in an additional 5,419 affected individuals and 19,833 controls from 14 studies. Three SNPs reached genome-wide significance in the discovery and replication cohorts combined, including rs479844 upstream of OVOL1 (odds ratio (OR) = 0.88, P = 1.1 × 10(-13)) and rs2164983 near ACTL9 (OR = 1.16, P = 7.1 × 10(-9)), both of which are near genes that have been implicated in epidermal proliferation and differentiation, as well as rs2897442 in KIF3A within the cytokine cluster at 5q31.1 (OR = 1.11, P = 3.8 × 10(-8)). We also replicated association with the FLG locus and with two recently identified association signals at 11q13.5 (rs7927894; P = 0.008) and 20q13.33 (rs6010620; P = 0.002). Our results underline the importance of both epidermal barrier function and immune dysregulation in atopic dermatitis pathogenesis.

Indexed as

Genetic LociGenome-Wide Association StudyCell DifferentiationChromosomes, Human, Pair 11Chromosomes, Human, Pair 20Chromosomes, Human, Pair 5CytokinesDermatitis, AtopicDNA-Binding ProteinsEpidermisFemaleFilaggrin ProteinsGenetic Predisposition to DiseaseHumansIntermediate Filament ProteinsKinesinsCytokinesDNA-Binding ProteinsFilaggrin ProteinsFLG protein, humanIntermediate Filament ProteinsKIF3A protein, humanKinesinsOVOL1 protein, humanTranscription Factors

Identifiers

PMID22197932
PMCPMC3272375
OpenAlexW1999690368

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.