Evidence map›Paper›PMID 22197931›Full record

ArticleNature genetics2011

Exome sequencing identifies recurrent somatic MAP2K1 and MAP2K2 mutations in melanoma.

Sergey I Nikolaev, Donata Rimoldi, Christian Iseli, Armand Valsesia, Daniel Robyr, Corinne Gehrig, Keith Harshman, Michel Guipponi, Olesya Bukach, Vincent Zoete and 9 more

Abstract read
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In one paragraph

Article in Nature genetics, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 219 papers, 4 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
219citing papers in PubMed, 4 pooled it
18.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

219 citing papers in PubMed, 4 syntheses or guidelines pooled it, 396 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. The Predictive Value ofFrontiers in immunology · 2021
    Pooled it
  4. Pooled it
  5. Review
  6. Article
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  11. Article
  12. Endometrial carcinomas with ambiguous histology often harbor TP53 mutations.Virchows Archiv : an international journal of pathology · 2025
    Article
  13. Review
  14. Review
  15. The Significance of Aldehyde Dehydrogenase 1 in Cancers.International journal of molecular sciences · 2024
    Review
  16. Article
  17. Melanoma genomics - will we go beyond BRAF in clinics?Journal of cancer research and clinical oncology · 2024
    Review
  18. Article
  19. Article
  20. Article

159 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 6 institutions in 2 countries.

Sergey I NikolaevDepartment of Genetic Medicine and Development, University of Geneva, Geneva, Switzerland.
Donata Rimoldi
Christian Iseli
Armand Valsesia
Daniel Robyr
Corinne Gehrig
Keith Harshman
Michel Guipponi
Olesya Bukach
Vincent Zoete
Olivier Michielin
Katja Muehlethaler
Daniel Speiser
Jacques S Beckmann
Ioannis Xenarios
Thanos D Halazonetis
C Victor Jongeneel
Brian J Stevenson
Stylianos E Antonarakis
University of Geneva · CHLudwig Cancer Research · CHSIB Swiss Institute of Bioinformatics · CHUniversity of Lausanne · CHUniversity Hospital of Lausanne · CHUniversity of Illinois Urbana-Champaign · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We performed exome sequencing to detect somatic mutations in protein-coding regions in seven melanoma cell lines and donor-matched germline cells. All melanoma samples had high numbers of somatic mutations, which showed the hallmark of UV-induced DNA repair. Such a hallmark was absent in tumor sample-specific mutations in two metastases derived from the same individual. Two melanomas with non-canonical BRAF mutations harbored gain-of-function MAP2K1 and MAP2K2 (MEK1 and MEK2, respectively) mutations, resulting in constitutive ERK phosphorylation and higher resistance to MEK inhibitors. Screening a larger cohort of individuals with melanoma revealed the presence of recurring somatic MAP2K1 and MAP2K2 mutations, which occurred at an overall frequency of 8%. Furthermore, missense and nonsense somatic mutations were frequently found in three candidate melanoma genes, FAT4, LRP1B and DSC1.

Indexed as

MutationBase SequenceCadherinsCell Line, TumorCohort StudiesDesmocollinsDNA RepairExomeHumansMAP Kinase Kinase 1MAP Kinase Kinase 2MelanomaMitogen-Activated Protein Kinase 1Molecular Sequence DataProto-Oncogene Proteins B-rafReceptors, LDLBRAF protein, humanCadherinsDesmocollinsDSC1 protein, humanFAT4 protein, humanLRP1B protein, humanMAP2K1 protein, humanMAP2K2 protein, humanMAPK1 protein, humanMAP Kinase Kinase 1MAP Kinase Kinase 2Mitogen-Activated Protein Kinase 1Proto-Oncogene Proteins B-rafReceptors, LDLTumor Suppressor Proteins

Identifiers

PMID22197931
OpenAlexW2019564564

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.