Evidence map›Paper›PMID 22197929›Full record

ArticleNature genetics2011

A genome-wide association study in Han Chinese identifies multiple susceptibility loci for IgA nephropathy.

Xue-Qing Yu, Ming Li, Hong Zhang, Hui-Qi Low, Xin Wei, Jin-Quan Wang, Liang-Dan Sun, Kar-Seng Sim, Yi Li, Jia-Nee Foo and 15 more

Abstract read
PubMed Publisher
In one paragraph

Article in Nature genetics, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 172 papers, 4 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
172citing papers in PubMed, 4 pooled it
8.2field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

172 citing papers in PubMed, 4 syntheses or guidelines pooled it, 306 citations in OpenAlex.

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  6. A Rare Genetic Defect ofFrontiers in immunology · 2019
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  10. The Roles of A Proliferation-Inducing Ligand (APRIL) and B-Cell Activating Factor (BAFF) in IgA Nephropathy.American journal of kidney diseases : the official journal of the National Kidney Foundation · 2026
    Review
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112 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

25 authors at 10 institutions in 2 countries.

Xue-Qing YuDepartment of Nephrology, The First Affiliated Hospital, Sun Yat-sen University, Guangzhou, Guangdong, China. yuxq@mail.sysu.edu.cn
Ming Li
Hong Zhang
Hui-Qi Low
Xin Wei
Jin-Quan Wang
Liang-Dan Sun
Kar-Seng Sim
Yi Li
Jia-Nee Foo
Wei Wang
Zhi-Jian Li
Xian-Yong Yin
Xue-Qing Tang
Li Fan
Jian Chen
Rong-Shan Li
Jian-Xin Wan
Zhang-Suo Liu
Tan-Qi Lou
Li Zhu
Xiao-Jun Huang
Xue-Jun Zhang
Zhi-Hong Liu
Jian-Jun Liu
The First Affiliated Hospital, Sun Yat-sen University · CNGenome Institute of Singapore · SGNanjing General Hospital of Nanjing Military Command · CNPeking University · CNAnhui Medical University · CNMinistry of Education of the People's Republic of China · CNFujian Medical University · CNFuzhou General Hospital of Nanjing Military Command · CNShanxi Medical University · CNSun Yat-sen University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We performed a two-stage genome-wide association study of IgA nephropathy (IgAN) in Han Chinese, with 1,434 affected individuals (cases) and 4,270 controls in the discovery phase and follow-up of the top 61 SNPs in an additional 2,703 cases and 3,464 controls. We identified associations at 17p13 (rs3803800, P = 9.40 × 10(-11), OR = 1.21; rs4227, P = 4.31 × 10(-10), OR = 1.23) and 8p23 (rs2738048, P = 3.18 × 10(-14), OR = 0.79) that implicated the genes encoding tumor necrosis factor (TNFSF13) and α-defensin (DEFA) as susceptibility genes. In addition, we found multiple associations in the major histocompatibility complex (MHC) region (rs660895, P = 4.13 × 10(-20), OR = 1.34; rs1794275, P = 3.43 × 10(-13), OR = 1.30; rs2523946, P = 1.74 × 10(-11), OR = 1.21) and confirmed a previously reported association at 22q12 (rs12537, P = 1.17 × 10(-11), OR = 0.78). We also found that rs660895 was associated with clinical subtypes of IgAN (P = 0.003), proteinuria (P = 0.025) and IgA levels (P = 0.047). Our findings show that IgAN is associated with variants near genes involved in innate immunity and inflammation.

Indexed as

Genetic LociGenome-Wide Association Studyalpha-DefensinsAsian PeopleCase-Control StudiesFemaleGenetic Predisposition to DiseaseGlomerulonephritis, IGAHumansImmunoglobulin AMajor Histocompatibility ComplexMalePolymorphism, Single NucleotideProteinuriaTumor Necrosis Factor Ligand Superfamily Member 13alpha-DefensinsImmunoglobulin ATNFSF13 protein, humanTumor Necrosis Factor Ligand Superfamily Member 13

Identifiers

PMID22197929
OpenAlexW1981189656

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.