Evidence map›Paper›PMID 22197376›Full record

ArticleJournal of molecular biology2012

Engineering antibody fitness and function using membrane-anchored display of correctly folded proteins.

Amy J Karlsson, Hyung-Kwon Lim, Hansen Xu, Mark A Rocco, Matthew A Bratkowski, Ailong Ke, Matthew P DeLisa

Abstract read
In one paragraph

Article in Journal of molecular biology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. An Engineered Outer Membrane-DefectiveJournal of microbiology and biotechnology · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Amy J KarlssonSchool of Chemical and Biomolecular Engineering, Cornell University, Ithaca, NY 14853, USA.
Hyung-Kwon Lim
Hansen Xu
Mark A Rocco
Matthew A Bratkowski
Ailong Ke
Matthew P DeLisa

Funding

Rapid isolation of high-affinity human antibodies from large synthetic librariesR41GM090585 · NIGMS · VYBION, INC. · PI DELISA, MATTHEW P · 2010 to 2010
$200k
Engineering intrabodies for knockdown of target proteins in cancer cellsF32CA150622 · NCI · CORNELL UNIVERSITY · PI KARLSSON, AMY J · 2011 to 2011
$49k
NCI NIH HHS F32 CA150622NCI NIH HHS F32CA150622NIGMS NIH HHS R41 GM090585NIGMS NIH HHS R41GM090585
6 · The paper itself

Abstract

A hallmark of the bacterial twin-arginine translocation (Tat) pathway is its ability to export folded proteins. Here, we discovered that overexpressed Tat substrate proteins form two distinct, long-lived translocation intermediates that are readily detected by immunolabeling methods. Formation of the early translocation intermediate Ti-1, which exposes the N- and C-termini to the cytoplasm, did not require an intact Tat translocase, a functional Tat signal peptide, or a correctly folded substrate. In contrast, formation of the later translocation intermediate, Ti-2, which exhibits a bitopic topology with the N-terminus in the cytoplasm and C-terminus in the periplasm, was much more particular, requiring an intact translocase, a functional signal peptide, and a correctly folded substrate protein. The ability to directly detect Ti-2 intermediates was subsequently exploited for a new protein engineering technology called MAD-TRAP (membrane-anchored display for Tat-based recognition of associating proteins). Through the use of just two rounds of mutagenesis and screening with MAD-TRAP, the intracellular folding and antigen-binding activity of a human single-chain antibody fragment were simultaneously improved. This approach has several advantages for library screening, including the unique involvement of the Tat folding quality control mechanism that ensures only native-like proteins are displayed, thus eliminating poorly folded sequences from the screening process.

Indexed as

AntigensCarrier ProteinsCytoplasmEscherichia coliEscherichia coli ProteinsImmunohistochemistryLigandsMembrane Transport ProteinsMutagenesisPeriplasmProtein EngineeringProtein FoldingProtein Sorting SignalsProtein TransportSingle-Chain AntibodiesAntigensCarrier ProteinsEscherichia coli ProteinsLigandsMembrane Transport ProteinsProtein Sorting SignalsSingle-Chain Antibodiestwin-arginine translocase complex, E coli

Identifiers

PMID22197376
PMCPMC3268853

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.