Evidence map›Paper›PMID 22197243›Full record

ArticleCurrent biology : CB2012

Emergence of patterned activity in the developing zebrafish spinal cord.

Erica Warp, Gautam Agarwal, Claire Wyart, Drew Friedmann, Claire S Oldfield, Alden Conner, Filippo Del Bene, Aristides B Arrenberg, Herwig Baier, Ehud Y Isacoff

Abstract read
In one paragraph

Article in Current biology : CB, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 80 papers.

0numbers the graph read from it
0cells of the map it votes in
80citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

80 citing papers in PubMed.

  1. Article
  2. Review
  3. Split genetically encoded calcium indicators for interorganellar junctions.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  4. Article
  5. Electrical Synapses Mediate Embryonic Hyperactivity in a Zebrafish Model of Fragile X Syndrome.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2024
    Article
  6. Article
  7. Review
  8. Article
  9. Review
  10. Article
  11. Article
  12. Ciliary localization of a light-activated neuronal GPCR shapes behavior.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. From calcium imaging to graph topology.Network neuroscience (Cambridge, Mass.) · 2022
    Review
  18. Critical periods inFrontiers in physiology · 2022
    Review
  19. Article
  20. Chloride imbalance in Fragile X syndrome.Frontiers in neuroscience · 2022
    Article

20 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors.

Erica WarpHelen Wills Neuroscience Graduate Program, University of California, Berkeley, Berkeley, CA 94720, USA.
Gautam Agarwal
Claire Wyart
Drew Friedmann
Claire S Oldfield
Alden Conner
Filippo Del Bene
Aristides B Arrenberg
Herwig Baier
Ehud Y Isacoff

Funding

NDC for the Optical Control of Biological FunctionPN2EY018241 · NEI · UNIVERSITY OF CALIFORNIA BERKELEY · PI ISACOFF, EHUD · 2006 to 2015
$37.5M
Optical Stimulation MicroscopeS10RR028971 · NCRR · UNIVERSITY OF CALIFORNIA BERKELEY · PI ISACOFF, EHUD · 2011 to 2011
$596k
The Role of LFP Spatial Structure in the HippocampusF32MH093048 · NIMH · UNIVERSITY OF CALIFORNIA BERKELEY · PI AGARWAL, GAUTAM · 2010 to 2013
$161k
NCRR NIH HHS S10 RR028971NEI NIH HHS PN2 EY018241NEI NIH HHS PN2EY018241
6 · The paper itself

Abstract

backgroundDeveloping neural networks display spontaneous and correlated rhythmic bursts of action potentials that are essential for circuit refinement. In the spinal cord, it is poorly understood how correlated activity is acquired and how its emergence relates to the formation of the spinal central pattern generator (CPG), the circuit that mediates rhythmic behaviors like walking and swimming. It is also unknown whether early, uncorrelated activity is necessary for the formation of the coordinated CPG.

resultsTime-lapse imaging in the intact zebrafish embryo with the genetically encoded calcium indicator GCaMP3 revealed a rapid transition from slow, sporadic activity to fast, ipsilaterally correlated, and contralaterally anticorrelated activity, characteristic of the spinal CPG. Ipsilateral correlations were acquired through the coalescence of local microcircuits. Brief optical manipulation of activity with the light-driven pump halorhodopsin revealed that the transition to correlated activity was associated with a strengthening of ipsilateral connections, likely mediated by gap junctions. Contralateral antagonism increased in strength at the same time. The transition to coordinated activity was disrupted by long-term optical inhibition of sporadic activity in motoneurons and ventral longitudinal descending interneurons and resulted in more neurons exhibiting uncoordinated activity patterns at later time points.

conclusionsThese findings show that the CPG in the zebrafish spinal cord emerges directly from a sporadically active network as functional connectivity strengthens between local and then more distal neurons. These results also reveal that early, sporadic activity in a subset of ventral spinal neurons is required for the integration of maturing neurons into the coordinated CPG network.

Indexed as

Action PotentialsAnimalsCalcium SignalingHalorhodopsinsNerve NetSpinal CordZebrafishHalorhodopsins

Identifiers

PMID22197243
PMCPMC3267884

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.