Evidence map›Paper›PMID 22195017›Full record

ArticlePloS one2011

The human nucleolar protein FTSJ3 associates with NIP7 and functions in pre-rRNA processing.

Luis G Morello, Patricia P Coltri, Alexandre J C Quaresma, Fernando M Simabuco, Tereza C L Silva, Guramrit Singh, Jeffrey A Nickerson, Carla C Oliveira, Melissa J Moore, Nilson I T Zanchin

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
0.8field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 40 citations in OpenAlex.

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  15. Variants inProceedings of the National Academy of Sciences of the United States of America · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 2 countries.

Luis G MorelloLaboratório Nacional de Biociências, Centro Nacional de Pesquisa em Energia e Materiais, Campinas, São Paulo, Brazil.
Patricia P Coltri
Alexandre J C Quaresma
Fernando M Simabuco
Tereza C L Silva
Guramrit Singh
Jeffrey A Nickerson
Carla C Oliveira
Melissa J Moore
Nilson I T Zanchin
University of Massachusetts Chan Medical School · USBrazilian Center for Research in Energy and Materials · BRHoward Hughes Medical Institute · USUniversidade de São Paulo · BRFundação Carlos Chagas · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

NIP7 is one of the many trans-acting factors required for eukaryotic ribosome biogenesis, which interacts with nascent pre-ribosomal particles and dissociates as they complete maturation and are exported to the cytoplasm. By using conditional knockdown, we have shown previously that yeast Nip7p is required primarily for 60S subunit synthesis while human NIP7 is involved in the biogenesis of 40S subunit. This raised the possibility that human NIP7 interacts with a different set of proteins as compared to the yeast protein. By using the yeast two-hybrid system we identified FTSJ3, a putative ortholog of yeast Spb1p, as a human NIP7-interacting protein. A functional association between NIP7 and FTSJ3 is further supported by colocalization and coimmunoprecipitation analyses. Conditional knockdown revealed that depletion of FTSJ3 affects cell proliferation and causes pre-rRNA processing defects. The major pre-rRNA processing defect involves accumulation of the 34S pre-rRNA encompassing from site A' to site 2b. Accumulation of this pre-rRNA indicates that processing of sites A0, 1 and 2 are slower in cells depleted of FTSJ3 and implicates FTSJ3 in the pathway leading to 18S rRNA maturation as observed previously for NIP7. The results presented in this work indicate a close functional interaction between NIP7 and FTSJ3 during pre-rRNA processing and show that FTSJ3 participates in ribosome synthesis in human cells.

Indexed as

RNA Processing, Post-TranscriptionalCell NucleolusCell ProliferationDoxycyclineGene Knockdown TechniquesHEK293 CellsHumansImmunoprecipitationKineticsMethyltransferasesNuclear ProteinsProtein BindingProtein TransportReproducibility of ResultsRNARNA InterferenceDoxycyclineFTSJ3 protein, humanMethyltransferasesNIP7 protein, humanNuclear ProteinsRNARNA, MessengerRNA Precursors

Identifiers

PMID22195017
PMCPMC3241699
OpenAlexW2155433449

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.