Evidence map›Paper›PMID 22194471›Full record

ArticleGenome research2012

Promoter architecture of mouse olfactory receptor genes.

Charles Plessy, Giovanni Pascarella, Nicolas Bertin, Altuna Akalin, Claudia Carrieri, Anne Vassalli, Dejan Lazarevic, Jessica Severin, Christina Vlachouli, Roberto Simone and 9 more

Open access · hybridAbstract read
In one paragraph

Article in Genome research, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed, 64 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Review
  7. Review
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 8 institutions in 8 countries.

Charles PlessyRIKEN Yokohama Institute, Omics Science Center, Yokohama, Kanagawa, Japan.
Giovanni Pascarella
Nicolas Bertin
Altuna Akalin
Claudia Carrieri
Anne Vassalli
Dejan Lazarevic
Jessica Severin
Christina Vlachouli
Roberto Simone
Geoffrey J Faulkner
Jun Kawai
Carsten O Daub
Silvia Zucchelli
Yoshihide Hayashizaki
Peter Mombaerts
Boris Lenhard
Stefano Gustincich
Piero Carninci
Scuola Internazionale Superiore di Studi Avanzati · ITRIKEN · JPCornell University · USMax Planck Society · DERIKEN Center for Integrative Medical Sciences · JPRockefeller University · USRoslin Institute · GBUniversity of Bergen · NO

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Odorous chemicals are detected by the mouse main olfactory epithelium (MOE) by about 1100 types of olfactory receptors (OR) expressed by olfactory sensory neurons (OSNs). Each mature OSN is thought to express only one allele of a single OR gene. Major impediments to understand the transcriptional control of OR gene expression are the lack of a proper characterization of OR transcription start sites (TSSs) and promoters, and of regulatory transcripts at OR loci. We have applied the nanoCAGE technology to profile the transcriptome and the active promoters in the MOE. nanoCAGE analysis revealed the map and architecture of promoters for 87.5% of the mouse OR genes, as well as the expression of many novel noncoding RNAs including antisense transcripts. We identified candidate transcription factors for OR gene expression and among them confirmed by chromatin immunoprecipitation the binding of TBP, EBF1 (OLF1), and MEF2A to OR promoters. Finally, we showed that a short genomic fragment flanking the major TSS of the OR gene Olfr160 (M72) can drive OSN-specific expression in transgenic mice.

Indexed as

Promoter Regions, Genetic3' Untranslated RegionsAnimalsBase SequenceBinding SitesConsensus SequenceDNA-Binding ProteinsGene Expression ProfilingGene Expression RegulationGene OrderGenetic LociMEF2 Transcription FactorsMiceMice, TransgenicMyogenic Regulatory FactorsOlfactory Mucosa3' Untranslated RegionsDNA-Binding ProteinsMef2a protein, mouseMEF2 Transcription FactorsMyogenic Regulatory FactorsReceptors, OdorantTATA-Box Binding ProteinTranscription Factors

Identifiers

PMID22194471
PMCPMC3290784
OpenAlexW2127089406

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.