Evidence map›Paper›PMID 22194448›Full record

ArticleJournal of bacteriology2012

Identification of a new gene required for the biosynthesis of rhodoquinone in Rhodospirillum rubrum.

Zachary T Lonjers, Erin L Dickson, Thanh-Phuong T Chu, Jason E Kreutz, Florin A Neacsu, Kirk R Anders, Jennifer N Shepherd

Open access · bronzeAbstract read
In one paragraph

Article in Journal of bacteriology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
2.2field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 63 citations in OpenAlex.

  1. EPR characterization of a metal-binding site in RquA.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2026
    Article
  2. Article
  3. Article
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  5. Natural product reports · 2023
    Review
  6. Article
  7. Article
  8. Article
  9. Transcriptome Profiling Revealed MultipleFrontiers in microbiology · 2020
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. The Human Gut ColonizerFrontiers in cellular and infection microbiology · 2018
    Article
  17. Article
  18. Diversity and origins of anaerobic metabolism in mitochondria and related organelles.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2015
    Review
  19. The molecular evolution of the Qo motif.Genome biology and evolution · 2014
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Zachary T LonjersDepartment of Chemistry and Biochemistry, Gonzaga University, Spokane, Washington, USA.
Erin L Dickson
Thanh-Phuong T Chu
Jason E Kreutz
Florin A Neacsu
Kirk R Anders
Jennifer N Shepherd
Gonzaga University · US

Funding

Elucidation and Regulation of Rhodoquinone Biosynthesis in Rhodospirillum rubrumR15GM096398 · NIGMS · GONZAGA UNIVERSITY · PI SHEPHERD, JENNIFER NIVEN · 2011 to 2011
$241k
Howard Hughes Medical InstituteNIGMS NIH HHS 1R15GM096398-01NIGMS NIH HHS R15 GM096398
6 · The paper itself

Abstract

Rhodoquinone (RQ) is a required cofactor for anaerobic respiration in Rhodospirillum rubrum, and it is also found in several helminth parasites that utilize a fumarate reductase pathway. RQ is an aminoquinone that is structurally similar to ubiquinone (Q), a polyprenylated benzoquinone used in the aerobic respiratory chain. RQ is not found in humans or other mammals, and therefore, the inhibition of its biosynthesis may provide a novel antiparasitic drug target. To identify a gene specifically required for RQ biosynthesis, we determined the complete genome sequence of a mutant strain of R. rubrum (F11), which cannot grow anaerobically and does not synthesize RQ, and compared it with that of a spontaneous revertant (RF111). RF111 can grow anaerobically and has recovered the ability to synthesize RQ. The two strains differ by a single base pair, which causes a nonsense mutation in the putative methyltransferase gene rquA. To test whether this mutation is important for the F11 phenotype, the wild-type rquA gene was cloned into the pRK404E1 vector and conjugated into F11. Complementation of the anaerobic growth defect in F11 was observed, and liquid chromatography-time of flight mass spectrometry (LC-TOF-MS) analysis of lipid extracts confirmed that plasmid-complemented F11 was able to synthesize RQ. To further validate the requirement of rquA for RQ biosynthesis, we generated a deletion mutant from wild-type R. rubrum by the targeted replacement of rquA with a gentamicin resistance cassette. The ΔrquA mutant exhibited the same phenotype as that of F11. These results are significant because rquA is the first gene to be discovered that is required for RQ biosynthesis.

Indexed as

Genome, BacterialAerobiosisAnaerobiosisBiosynthetic PathwaysChromatography, LiquidCodon, NonsenseDNA, BacterialDNA Mutational AnalysisGene DeletionGenetic Complementation TestHumansMass SpectrometryMethyltransferasesMolecular Sequence DataRhodospirillum rubrumSequence Analysis, DNACodon, NonsenseDNA, BacterialMethyltransferasesrhodoquinoneUbiquinone

Identifiers

PMID22194448
PMCPMC3294814
OpenAlexW2005986304

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.