Evidence map›Paper›PMID 22190748›Full record

ArticleRNA (New York, N.Y.)2012

A novel role of RNA helicase A in regulation of translation of type I collagen mRNAs.

Zarko Manojlovic, Branko Stefanovic

Open access · bronzeAbstract read
In one paragraph

Article in RNA (New York, N.Y.), 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 50 papers.

0numbers the graph read from it
0cells of the map it votes in
50citing papers in PubMed
3.2field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

50 citing papers in PubMed, 74 citations in OpenAlex.

  1. Article
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    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Zarko ManojlovicDepartment of Biomedical Sciences, College of Medicine, Florida State University, Tallahassee, FL 32306, USA.
Branko Stefanovic
Florida State University · US

Funding

Regulation of Type I Collagen in Hepatic FibrosisR01DK059466 · NIDDK · UNIVERSITY OF NORTH CAROLINA CHAPEL HILL · PI STEFANOVIC, BRANKO · 2002 to 2012
$2.4M
Translation Regulation of Collagen-1 in Liver Fibrosis: Target of Drug DiscoveryF31AA019845 · NIAAA · FLORIDA STATE UNIVERSITY · PI MANOJLOVIC, ZARKO · 2011 to 2013
$66k
NIAAA NIH HHS 1F31AA019845-01A1NIAAA NIH HHS F31 AA019845NIDDK NIH HHS 5R01DK059466-08NIDDK NIH HHS R01 DK059466
6 · The paper itself

Abstract

Type I collagen is composed of two α1(I) polypeptides and one α2(I) polypeptide and is the most abundant protein in the human body. Expression of type I collagen is primarily controlled at the level of mRNA stability and translation. Coordinated translation of α(I) and α2(I) mRNAs is necessary for efficient folding of the corresponding peptides into the collagen heterotrimer. In the 5' untranslated region (5' UTR), collagen mRNAs have a unique 5' stem-loop structure (5' SL). La ribonucleoprotein domain family member 6 (LARP6) is the protein that binds 5' SL with high affinity and specificity and coordinates their translation. Here we show that RNA helicase A (RHA) is tethered to the 5' SL of collagen mRNAs by interaction with the C-terminal domain of LARP6. In vivo, collagen mRNAs immunoprecipitate with RHA in an LARP6-dependent manner. Knockdown of RHA prevents formation of polysomes on collagen mRNAs and dramatically reduces synthesis of collagen protein, without affecting the level of the mRNAs. A reporter mRNA with collagen 5' SL is translated three times more efficiently in the presence of RHA than the same reporter without the 5' SL, indicating that the 5' SL is the cis-acting element conferring the regulation. During activation of quiescent cells into collagen-producing cells, expression of RHA is highly up-regulated. We postulate that RHA is recruited to the 5' UTR of collagen mRNAs by LARP6 to facilitate their translation. Thus, RHA has been discovered as a critical factor for synthesis of the most abundant protein in the human body.

Indexed as

5' Untranslated RegionsAutoantigensCells, CulturedCollagen Type ICollagen Type I, alpha 1 ChainDEAD-box RNA HelicasesFibroblastsHEK293 CellsHepatic Stellate CellsHumansNeoplasm ProteinsPolyribosomesProtein FoldingProtein Interaction Domains and MotifsRibonucleoproteinsRNA-Binding Proteins5' Untranslated RegionsAutoantigensCollagen Type ICollagen Type I, alpha 1 ChainDEAD-box RNA HelicasesDHX9 protein, humanNeoplasm ProteinsRibonucleoproteinsRNA-Binding ProteinsRNA, MessengerSS-B Antigen

Identifiers

PMID22190748
PMCPMC3264918
OpenAlexW2102687059

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.