Evidence map›Paper›PMID 22190364›Full record

SynthesisAnnals of neurology2011

Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.

Nikolaos A Patsopoulos, Bayer Pharma MS Genetics Working Group, Steering Committees of Studies Evaluating IFNβ-1b and a CCR1-Antagonist, ANZgene Consortium, GeneMSA, International Multiple Sclerosis Genetics Consortium, Federica Esposito, Joachim Reischl, Stephan Lehr, David Bauer and 67 more

Erratum issuedOpen access · bronzeAbstract readMeta-Analysis
In one paragraph

Synthesis in Annals of neurology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 199 papers, 8 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
199citing papers in PubMed, 8 pooled it
23.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

199 citing papers in PubMed, 8 syntheses or guidelines pooled it, 349 citations in OpenAlex.

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139 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

77 authors at 2 institutions in 2 countries.

Nikolaos A PatsopoulosProgram in Translational NeuroPsychiatric Genomics, Institute for the Neurosciences, Department of Neurology, Brigham and Women's Hospital, Boston, MA 02115, USA.
Bayer Pharma MS Genetics Working Group
Steering Committees of Studies Evaluating IFNβ-1b and a CCR1-Antagonist
ANZgene Consortium
GeneMSA
International Multiple Sclerosis Genetics Consortium
Federica Esposito
Joachim Reischl
Stephan Lehr
David Bauer
Jürgen Heubach
Rupert Sandbrink
Christoph Pohl
Gilles Edan
Ludwig Kappos
David Miller
Javier Montalbán
Chris H Polman
Mark S Freedman
Hans-Peter Hartung
Barry G W Arnason
Giancarlo Comi
Stuart Cook
Massimo Filippi
Douglas S Goodin
Douglas Jeffery
Paul O'Connor
George C Ebers
Dawn Langdon
Anthony T Reder
Anthony Traboulsee
Frauke Zipp
Sebastian Schimrigk
Jan Hillert
Melanie Bahlo
David R Booth
Simon Broadley
Matthew A Brown
Brian L Browning
Sharon R Browning
Helmut Butzkueven
William M Carroll
Caron Chapman
Simon J Foote
Lyn Griffiths
Allan G Kermode
Trevor J Kilpatrick
Jeanette Lechner-Scott
Mark Marriott
Deborah Mason
Pablo Moscato
Robert N Heard
Michael P Pender
Victoria M Perreau
Devindri Perera
Justin P Rubio
Rodney J Scott
Mark Slee
Jim Stankovich
Graeme J Stewart
Bruce V Taylor
Niall Tubridy
Ernest Willoughby
James Wiley
Paul Matthews
Filippo M Boneschi
Alastair Compston
Jonathan Haines
Stephen L Hauser
Jacob McCauley
Adrian Ivinson
Jorge R Oksenberg
Margaret Pericak-Vance
Stephen J Sawcer
Philip L De Jager
David A Hafler
Paul I W de Bakker
Brigham and Women's Hospital · USBroad Institute · US

Funding

Role of Negative Costimulation in Regulation of AutoimmunityP01AI039671 · NIAID · YALE UNIVERSITY · PI David A. Hafler · 1996 to 2026
$51.7M
MOLECULAR GENETICS OF SCHIZOPHRENIAR01MH059571 · NIMH · UNIVERSITY OF CHICAGO · PI GEJMAN, PABLO V. · 1999 to 2007
$8.0M
A Genome-Wide Association Study of SchizophreniaU01MH079469 · NIMH · NORTHSHORE UNIVERSITY HEALTHSYSTEM · PI GEJMAN, PABLO V. · 2007 to 2009
$4.4M
MOLECULAR GENETICS OF SCHIZOPHRENIAR01MH060879 · NIMH · WASHINGTON UNIVERSITY · PI CLONINGER, C. ROBERT · 1999 to 2006
$2.7M
The Role of Rare Variants in Multiple Sclerosis RiskRC2NS070340 · NINDS · YALE UNIVERSITY · PI HAFLER, DAVID A. · 2009 to 2010
$1.9M
MOLECULAR GENETICS OF SCHIZOPHRENIAR01MH059586 · NIMH · MOUNT SINAI SCHOOL OF MEDICINE OF NYU · PI SILVERMAN, JEREMY M. · 1999 to 2006
$1.9M
MOLECULAR GENETICS OF SCHIZOPHRENIAR01MH061675 · NIMH · UNIVERSITY OF PENNSYLVANIA · PI LEVINSON, DOUGLAS FREDERICK · 1999 to 2007
$1.8M
MOLECULAR GENETICS OF SCHIZOPHRENIAR01MH059587 · NIMH · EMORY UNIVERSITY · PI AMIN, FAROOQ · 1999 to 2006
$1.8M
MOLECULAR GENETICS OF SCHIZOPHRENIAR01MH059565 · NIMH · UNIVERSITY OF COLORADO DENVER · PI FREEDMAN, ROBERT · 1999 to 2006
$1.7M
Improving genotype call accuracyR01HG004960 · NHGRI · UNIVERSITY OF WASHINGTON · PI BROWNING, BRIAN LEE · 2009 to 2014
$1.4M
MOLECULAR GENETICS OF SCHIZOPHRENIAR01MH059588 · NIMH · UNIVERSITY OF QUEENSLAND · PI MOWRY, BRYAN JOHN · 1999 to 2006
$1.4M
MOLECULAR GENETICS OF SCHIZOPHRENIAR01MH060870 · NIMH · UNIVERSITY OF CALIFORNIA IRVINE · PI BYERLEY, WILLIAM · 1999 to 2006
$1.3M
Medical Research Council G0000934NHGRI NIH HHS R01 HG004960NIAID NIH HHS P01 AI039671NIMH NIH HHS R01 MH59565NIMH NIH HHS R01 MH59566NIMH NIH HHS R01 MH59571NIMH NIH HHS R01 MH59586NIMH NIH HHS R01 MH59587NIMH NIH HHS R01 MH59588NIMH NIH HHS R01 MH60870NIMH NIH HHS R01 MH60879NIMH NIH HHS R01 MH61675NIMH NIH HHS R01 MH67257NIMH NIH HHS R01MH81800NIMH NIH HHS U01 MH46276NIMH NIH HHS U01 MH46289NIMH NIH HHS U01 MH46318NIMH NIH HHS U01 MH79469NIMH NIH HHS U01 MH79470NINDS NIH HHS R01 NS067305NINDS NIH HHS RC2 NS070340Wellcome TrustWellcome Trust 068545/Z/02
6 · The paper itself

Abstract

objectiveTo perform a 1-stage meta-analysis of genome-wide association studies (GWAS) of multiple sclerosis (MS) susceptibility and to explore functional consequences of new susceptibility loci.

methodsWe synthesized 7 MS GWAS. Each data set was imputed using HapMap phase II, and a per single nucleotide polymorphism (SNP) meta-analysis was performed across the 7 data sets. We explored RNA expression data using a quantitative trait analysis in peripheral blood mononuclear cells (PBMCs) of 228 subjects with demyelinating disease.

resultsWe meta-analyzed 2,529,394 unique SNPs in 5,545 cases and 12,153 controls. We identified 3 novel susceptibility alleles: rs170934(T) at 3p24.1 (odds ratio [OR], 1.17; p = 1.6 × 10(-8)) near EOMES, rs2150702(G) in the second intron of MLANA on chromosome 9p24.1 (OR, 1.16; p = 3.3 × 10(-8)), and rs6718520(A) in an intergenic region on chromosome 2p21, with THADA as the nearest flanking gene (OR, 1.17; p = 3.4 × 10(-8)). The 3 new loci do not have a strong cis effect on RNA expression in PBMCs. Ten other susceptibility loci had a suggestive p < 1 × 10(-6) , some of these loci have evidence of association in other inflammatory diseases (ie, IL12B, TAGAP, PLEK, and ZMIZ1).

interpretationWe have performed a meta-analysis of GWAS in MS that more than doubles the size of previous gene discovery efforts and highlights 3 novel MS susceptibility loci. These and additional loci with suggestive evidence of association are excellent candidates for further investigations to refine and validate their role in the genetic architecture of MS.

Indexed as

Disease SusceptibilityGenetic Predisposition to DiseaseMultiple SclerosisPolymorphism, Single NucleotideAdolescentAdultChildFemaleGene FrequencyGenome-Wide Association StudyGenotypeHumansMaleMiddle AgedOdds RatioYoung Adult

Identifiers

PMID22190364
PMCPMC3247076
OpenAlexW2110228129

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.