Evidence map›Paper›PMID 22189117›Full record

ArticleJournal of clinical microbiology2012

High proportion of fluoroquinolone-resistant Mycobacterium tuberculosis isolates with novel gyrase polymorphisms and a gyrA region associated with fluoroquinolone susceptibility.

Rose Devasia, Amondrea Blackman, Svetlana Eden, Haijing Li, Fernanda Maruri, Ayumi Shintani, Charles Alexander, Anne Kaiga, Charles W Stratton, Jon Warkentin and 2 more

Open access · greenAbstract read
In one paragraph

Article in Journal of clinical microbiology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed, 1 pooled it
1.4field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 1 synthesis or guideline pooled it, 50 citations in OpenAlex.

  1. Pooled it
  2. Gemifloxacin resistance inMicrobiology spectrum · 2026
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  8. Whole Genome Sequencing ofFrontiers in microbiology · 2019
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  9. Mutations inAntimicrobial agents and chemotherapy · 2018
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Specific gyrA gene mutations predict poor treatment outcome in MDR-TB.The Journal of antimicrobial chemotherapy · 2016
    Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 1 country.

Rose DevasiaUniversity of Louisville School of Medicine, Louisville, Kentucky, USA.
Amondrea Blackman
Svetlana Eden
Haijing Li
Fernanda Maruri
Ayumi Shintani
Charles Alexander
Anne Kaiga
Charles W Stratton
Jon Warkentin
Yi-Wei Tang
Timothy R Sterling
Vanderbilt University · USTennessee Department of Health · USUniversity of Louisville · US

Funding

Vanderbilt Mentored Clinical Research Scholar ProgramK12RR017697 · NCRR · VANDERBILT UNIVERSITY · PI BROWN, NANCY JOAN · 2002 to 2006
$4.7M
Fluoroquinolone Resistance in M. TuberculosisR01AI063200 · NIAID · VANDERBILT UNIVERSITY · PI STERLING, TIMOTHY R · 2006 to 2010
$1.8M
Mentoring in HIV and Tuberculosis ResearchK24AI065298 · NIAID · VANDERBILT UNIVERSITY · PI STERLING, TIMOTHY R · 2005 to 2014
$1.6M
NCRR NIH HHS K12 RR017697NCRR NIH HHS K12 RR017697-05NIAID NIH HHS K24 AI065298NIAID NIH HHS K24 AI 65298NIAID NIH HHS R01 AI 063200NIAID NIH HHS R01 AI063200
6 · The paper itself

Abstract

Fluoroquinolone resistance in Mycobacterium tuberculosis can be conferred by mutations in gyrA or gyrB. The prevalence of resistance mutations outside the quinolone resistance-determining region (QRDR) of gyrA or gyrB is unclear, since such regions are rarely sequenced. M. tuberculosis isolates from 1,111 patients with newly diagnosed culture-confirmed tuberculosis diagnosed in Tennessee from 2002 to 2009 were screened for phenotypic ofloxacin resistance (>2 μg/ml). For each resistant isolate, two ofloxacin-susceptible isolates were selected: one with antecedent fluoroquinolone exposure and one without. The complete gyrA and gyrB genes were sequenced and compared with M. tuberculosis H37Rv. Of 25 ofloxacin-resistant isolates, 11 (44%) did not have previously reported resistance mutations. Of these, 10 had novel polymorphisms: 3 in the QRDR of gyrA, 1 in the QRDR of gyrB, and 6 outside the QRDR of gyrA or gyrB; 1 did not have any gyrase polymorphisms. Polymorphisms in gyrA codons 1 to 73 were more common in fluoroquinolone-susceptible than in fluoroquinolone-resistant strains (20% versus 0%; P = 0.016). In summary, almost half of fluoroquinolone-resistant M. tuberculosis isolates did not have previously described resistance mutations, which has implications for genotypic diagnostic tests.

Indexed as

AdultAgedAged, 80 and overAntitubercular AgentsBacterial ProteinsCodonDNA GyraseDNA Mutational AnalysisDrug Resistance, BacterialFemaleFluoroquinolonesHumansMaleMiddle AgedMutation, MissenseMycobacterium tuberculosisAntitubercular AgentsBacterial ProteinsCodonDNA GyraseFluoroquinolones

Identifiers

PMID22189117
PMCPMC3318526
OpenAlexW2097045534

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.