Evidence map›Paper›PMID 22187461›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2012

The proteasomal subunit Rpn6 is a molecular clamp holding the core and regulatory subcomplexes together.

Ganesh Ramnath Pathare, István Nagy, Stefan Bohn, Pia Unverdorben, Agnes Hubert, Roman Körner, Stephan Nickell, Keren Lasker, Andrej Sali, Tomohiro Tamura and 4 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 93 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
93citing papers in PubMed, 1 pooled it
8.1field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

93 citing papers in PubMed, 1 synthesis or guideline pooled it, 154 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. PKA-Mediated Proteasome Activation Protects Against Cardiac Remodeling and Heart Failure During Systolic Overload.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2026
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  10. Fungal COP9 signalosome assembly requires connection of two trimeric intermediates for integration of intrinsic deneddylase.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  11. PCID2 Subunit of theCurrent issues in molecular biology · 2023
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  14. International journal of biological sciences · 2023
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33 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 5 institutions in 4 countries.

Ganesh Ramnath PathareDepartment of Molecular Structural Biology, Max-Planck-Institute of Biochemistry, Am Klopferspitz 18, 82152 Martinsried, Germany.
István Nagy
Stefan Bohn
Pia Unverdorben
Agnes Hubert
Roman Körner
Stephan Nickell
Keren Lasker
Andrej Sali
Tomohiro Tamura
Taiki Nishioka
Friedrich Förster
Wolfgang Baumeister
Andreas Bracher
Max Planck Institute of Biochemistry · DEHokkaido University · JPNational Institute of Advanced Industrial Science and Technology · JPQB3 · USUniversity of California, San Francisco · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Proteasomes execute the degradation of most cellular proteins. Although the 20S core particle (CP) has been studied in great detail, the structure of the 19S regulatory particle (RP), which prepares ubiquitylated substrates for degradation, has remained elusive. Here, we report the crystal structure of one of the RP subunits, Rpn6, and we describe its integration into the cryo-EM density map of the 26S holocomplex at 9.1 Å resolution. Rpn6 consists of an α-solenoid-like fold and a proteasome COP9/signalosome eIF3 (PCI) module in a right-handed suprahelical configuration. Highly conserved surface areas of Rpn6 interact with the conserved surfaces of the Pre8 (alpha2) and Rpt6 subunits from the alpha and ATPase rings, respectively. The structure suggests that Rpn6 has a pivotal role in stabilizing the otherwise weak interaction between the CP and the RP.

Indexed as

Amino Acid SequenceAnimalsConserved SequenceCrystallography, X-RayDrosophila melanogasterDrosophila ProteinsModels, MolecularMolecular Sequence DataMultiprotein ComplexesProteasome Endopeptidase ComplexProtein BindingProtein SubunitsSchizosaccharomycesSolutionsSurface PropertiesDrosophila ProteinsMultiprotein ComplexesProteasome Endopeptidase ComplexProtein SubunitsRpn6 protein, DrosophilaSolutions

Identifiers

PMID22187461
PMCPMC3252951
OpenAlexW2116356926

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.