Evidence map›Paper›PMID 22187004›Full record

ArticleMolecular genetics and genomics : MGG2012

Modulation of auxin-binding protein 1 gene expression in maize and the teosintes by transposon insertions in its promoter.

Nabil Elrouby, Thomas E Bureau

Abstract read
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In one paragraph

Article in Molecular genetics and genomics : MGG, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
1.2field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 4 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 2 institutions in 2 countries.

Nabil ElroubyDepartment of Biology, McGill University, Montreal, QC H3A 1B1, Canada. elrouby@mpiz-koeln.mpg.de
Thomas E Bureau
Max Planck Society · DEMcGill University · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Auxin plays crucial roles in plant development. Auxin-binding protein 1 (ABP1) is an auxin receptor required to coordinate cell division and expansion during postembryonic shoot development, and differential auxin responses during root growth. While ABP1 is encoded by a single gene in maize, multiple gene copies exist in teosinte, the wild relatives of maize. We have previously shown that some of the differences between these genes are caused by multiple transposon insertions in the promoter. Here we show that the different ABP1 promoter types confer differential gene expression levels on a firefly luciferase reporter gene. We also discovered a negative regulatory sequence upstream of the conserved transcriptional start site. When this sequence is insulated by an Ac-like transposon or deleted in natural ABP1 gene variants, expression levels are enhanced. Promoters combining both a MITE and a solo-LTR showed small but significant increase in expression compared to those containing only one insertion. This increase seems to be additive, suggesting that it may be due to enhancer sequences present within these transposons. Our results point to a potential role of the ABP1-associated transposons in the modulation of ABP1 gene expression.

Indexed as

Gene Expression Regulation, PlantMutagenesis, InsertionalBase SequenceCells, CulturedDNA Transposable ElementsGene Expression Regulation, EnzymologicLuciferases, FireflyMolecular Sequence DataMutationPlant ProteinsPromoter Regions, GeneticProtoplastsReceptors, Cell SurfaceRegulatory Sequences, Nucleic AcidSequence DeletionSequence Homology, Nucleic Acidauxin-binding protein 1DNA Transposable ElementsLuciferases, FireflyPlant ProteinsReceptors, Cell Surface

Identifiers

PMID22187004
OpenAlexW1984370338

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.