Evidence map›Paper›PMID 22186232›Full record

ArticleDNA repair2012

Formaldehyde-induced genome instability is suppressed by an XPF-dependent pathway.

Anuradha Kumari, Yun Xin Lim, Amy Hanlon Newell, Susan B Olson, Amanda K McCullough

Abstract read
In one paragraph

Article in DNA repair, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.3field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 42 citations in OpenAlex.

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  16. Formaldehyde in pathology services: from molecular toxicity to histopathological change and occupational risk.Romanian journal of morphology and embryology = Revue roumaine de morphologie et embryologie
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Anuradha KumariCenter for Research on Occupational and Environmental Toxicology, Oregon Health & Science University, Portland, OR 97239, USA.
Yun Xin Lim
Amy Hanlon Newell
Susan B Olson
Amanda K McCullough
Oregon Health & Science University · US

Funding

Synthetic Approaches to Carcinogen-Linked OligonucleotidesP01CA160032 · NCI · VANDERBILT UNIVERSITY · PI STONE, MICHAEL P · 2012 to 2022
$14.0M
Cellular Responses to DNA-Protein CrosslinksR01CA106858 · NCI · OREGON HEALTH & SCIENCE UNIVERSITY · PI LLOYD, R. STEPHEN, MCCULLOUGH, AMANDA K · 2004 to 2016
$3.2M
Discovery and development of OGG1 activators as precision drugs for modification of Alzheimer's disease progression.R43AG084412 · NIA · LUCIOLE PHARMACEUTICALS, INC. · PI RUMSEY, WILLIAM L · 2023 to 2024
$502k
BASE FLIPPING AND DNA DAMAGE RECOGNITIONF32ES005780 · NIEHS · UNIVERSITY OF TEXAS MEDICAL BR GALVESTON · PI MCCULLOUGH, AMANDA K · 1997 to 1999
–
NCI NIH HHS CA 106858NCI NIH HHS P01 CA160032NCI NIH HHS R01 CA106858NIA NIH HHS R43 AG084412NIEHS NIH HHS F32 ES005780
6 · The paper itself

Abstract

Formaldehyde is a reactive chemical that is commonly used in the production of industrial, laboratory, household, and cosmetic products. The causal association between formaldehyde exposure and increased incidence of cancer led the International Agency for Research on Cancer to classify formaldehyde as a carcinogen. Formaldehyde-induced DNA-protein crosslinks (DPCs) elicit responses involving nucleotide excision repair (NER) and homologous recombination (HR) repair pathways; however, little is known about the cellular and genetic changes that subsequently lead to formaldehyde-induced genotoxic and cytotoxic effects. Herein, investigations of genes that modulate the cytotoxic effects of formaldehyde exposure revealed that of five NER-deficient Chinese Hamster Ovary (CHO) cell lines tested, XPF- and ERCC1-deficient cells were most sensitive to formaldehyde treatment as compared to wild-type cells. Cell cycle analyses revealed that formaldehyde-treated XPF-deficient cells exhibited an immediate G2/M arrest that was associated with altered cell ploidy and apoptosis. Additionally, an elevated number of DNA double-strand breaks (DSBs), chromosomal breaks and radial formation were also observed in XPF-deficient cells following formaldehyde treatment. Formaldehyde-induced DSBs occurred in a replication-dependent, but an XPF-independent manner. However, delayed DSB repair was observed in the absence of XPF function. Collectively, our findings highlight the role of an XPF-dependent pathway in mitigating the sensitivity to formaldehyde-induced DNA damage as evidenced by the increased genomic instability and reduced cell viability in an XPF-deficient background. In addition, centrosome and microtubule abnormalities, as well as enlarged nuclei, caused by formaldehyde exposure are demonstrated in a repair-proficient cell line.

Indexed as

AnimalsCell DeathCell NucleusCentrosomeCHO CellsChromosome BreakageCricetinaeCricetulusDNA-Binding ProteinsDNA Breaks, Double-StrandedDNA ReplicationEndonucleasesFormaldehydeG2 Phase Cell Cycle CheckpointsGenomic InstabilityMicrotubulesDNA-Binding ProteinsEndonucleasesFormaldehydexeroderma pigmentosum group F protein

Identifiers

PMID22186232
PMCPMC3274652
OpenAlexW2009137297

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.