Evidence map›Paper›PMID 22185756›Full record

ArticleCell cycle (Georgetown, Tex.)2012

MiR-365 regulates lung cancer and developmental gene thyroid transcription factor 1.

Ji Qi, Shawn J Rice, Anna C Salzberg, E Aaron Runkle, Jason Liao, Dani S Zander, David Mu

Open access · bronzeAbstract read
In one paragraph

Article in Cell cycle (Georgetown, Tex.), 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers.

0numbers the graph read from it
0cells of the map it votes in
51citing papers in PubMed
3.9field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

51 citing papers in PubMed, 88 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Ji QiDepartment of Pathology, Pennsylvania State College of Medicine, Hershey, PA, USA.
Shawn J Rice
Anna C Salzberg
E Aaron Runkle
Jason Liao
Dani S Zander
David Mu
Pennsylvania State University · USPenn State Milton S. Hershey Medical Center · USRussian State Agrarian Correspondence University · RU

Funding

Penn State Clinical and Translational Science InstituteUL1TR000127 · NCATS · PENNSYLVANIA STATE UNIV HERSHEY MED CTR · PI SINOWAY, LAWRENCE I · 2012 to 2015
$17.1M
PENN STATE CLINICAL AND TRANSLATIONAL SCIENCE INSTITUTEUL1RR033184 · NCRR · PENNSYLVANIA STATE UNIV HERSHEY MED CTR · PI SINOWAY, LAWRENCE I · 2011 to 2011
$4.5M
Identification and characterization of driver gene(s) in recurrent lung cancer amR01CA127547 · NCI · PENNSYLVANIA STATE UNIV HERSHEY MED CTR · PI MU, DAVID · 2008 to 2012
$1.5M
NCATS NIH HHS UL1 TR000127NCI NIH HHS CA127547NCI NIH HHS R01 CA127547NCRR NIH HHS UL1 RR033184NCRR NIH HHS UL1RR033184
6 · The paper itself

Abstract

Thyroid transcription factor 1 (TTF-1 or NKX2-1) is an essential fetal lung developmental factor, which can be recurrently activated by gene amplification in adult lung cancer. We have discovered the first microRNA (i.e., miR-365) that directly regulates TTF-1 by interacting with its 3'-untranslated region. By gene expression profiling, we identified other putative targets of miR-365 and miR-365*. In line with the microRNA/target relationship, the expression patterns of miR-365 and TTF-1 were in an inverse relationship in human lung cancer. Exploration of human lung cancer genomics data uncovered that TTF-1 gene amplification was significantly associated with DNA copy number loss at one of the two genomic loci encoding the precursor RNA of mature miR-365 (i.e., mir-365-1). This implies the existence of genetic selection pressure to lose the repressive miR-365 that would otherwise suppress amplified TTF-1. We detected a signaling loop between transforming growth factor beta (TGFb) and miR-365 and this loop reinforced suppression of TTF-1 via miR-365. Mir-365 also targeted an epithelial mesenchymal transition (EMT)-promoting gene HMGA2. In summary, these data connect the lung transcriptional program to the microRNA network.

Indexed as

Gene Expression Regulation3' Untranslated RegionsCell LineGene Expression ProfilingHMGA2 ProteinHumansLung NeoplasmsMicroRNAsNuclear ProteinsSignal TransductionThyroid Nuclear Factor 1Transcription FactorsTransforming Growth Factor beta3' Untranslated RegionsHMGA2 ProteinMicroRNAsMIRN365 microRNA, humanNKX2-1 protein, humanNuclear ProteinsThyroid Nuclear Factor 1Transcription FactorsTransforming Growth Factor beta

Identifiers

PMID22185756
PMCPMC3272236
OpenAlexW2022429639

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.