Evidence map›Paper›PMID 22180816›Full record

ArticleStandards in genomic sciences2011

Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and Rainey, 2010.

Hans-Peter Klenk, Alla Lapidus, Olga Chertkov, Alex Copeland, Tijana Glavina Del Rio, Matt Nolan, Susan Lucas, Feng Chen, Hope Tice, Jan-Fang Cheng and 23 more

Abstract read
In one paragraph

Article in Standards in genomic sciences, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed.

  1. Microorganisms · 2024
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  4. Microorganisms · 2022
    Review
  5. Article
  6. Article
  7. Article
  8. Hydrogen and Carbon Monoxide-UtilizingFrontiers in microbiology · 2020
    Article
  9. Article
  10. Complete Genome Sequence ofGenome announcements · 2018
    Article
  11. High-quality draft genome sequence ofStandards in genomic sciences · 2017
    Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. The state of standards in genomic sciences.Standards in genomic sciences · 2011
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

33 authors.

Hans-Peter Klenk
Alla Lapidus
Olga Chertkov
Alex Copeland
Tijana Glavina Del Rio
Matt Nolan
Susan Lucas
Feng Chen
Hope Tice
Jan-Fang Cheng
Cliff Han
David Bruce
Lynne Goodwin
Sam Pitluck
Amrita Pati
Natalia Ivanova
Konstantinos Mavromatis
Chris Daum
Amy Chen
Krishna Palaniappan
Yun-Juan Chang
Miriam Land
Loren Hauser
Cynthia D Jeffries
John C Detter
Manfred Rohde
Birte Abt
Rüdiger Pukall
Markus Göker
James Bristow
Victor Markowitz
Philip Hugenholtz
Jonathan A Eisen

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Bacillus tusciae Bonjour & Aragno 1994 is a hydrogen-oxidizing, thermoacidophilic spore former that lives as a facultative chemolithoautotroph in solfataras. Although 16S rRNA gene sequencing was well established at the time of the initial description of the organism, 16S sequence data were not available and the strain was placed into the genus Bacillus based on limited chemotaxonomic information. Despite the now obvious misplacement of strain T2 as a member of the genus Bacillus in 16S rRNA-based phylogenetic trees, the misclassification remained uncorrected for many years, which was likely due to the extremely difficult, analysis-hampering cultivation conditions and poor growth rate of the strain. Here we provide a taxonomic re-evaluation of strain T2T (= DSM 2912 = NBRC 15312) and propose its reclassification as the type strain of a new species, Kyrpidia tusciae, and the type species of the new genus Kyrpidia, which is a sister-group of Alicyclobacillus. The family Alicyclobacillaceae da Costa and Rainey, 2010 is emended. The 3,384,766 bp genome with its 3,323 protein-coding and 78 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.

Indexed as

aerobeBacillaceaefacultative chemolithoautotrophfree-livingGEBAhydrogen-oxidizingsolfataraspore-formingthermoacidophile

Identifiers

PMID22180816
PMCPMC3236038

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.