Evidence map›Paper›PMID 22180799›Full record

ArticlePLoS neglected tropical diseases2011

In vivo expression of Salmonella enterica serotype Typhi genes in the blood of patients with typhoid fever in Bangladesh.

Alaullah Sheikh, Richelle C Charles, Nusrat Sharmeen, Sean M Rollins, Jason B Harris, Md Saruar Bhuiyan, Mohammad Arifuzzaman, Farhana Khanam, Archana Bukka, Anuj Kalsy and 12 more

Abstract read
In one paragraph

Article in PLoS neglected tropical diseases, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Pathogenomics of Virulence Traits ofFrontiers in microbiology · 2018
    Article
  10. Article
  11. Article
  12. Transcriptomics in Human Challenge Models.Frontiers in immunology · 2017
    Review
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. The role of CRISPR-Cas systems in virulence of pathogenic bacteria.Microbiology and molecular biology reviews : MMBR · 2014
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors.

Alaullah SheikhInternational Centre for Diarrhoeal Disease Research, Bangladesh, Dhaka, Bangladesh.
Richelle C Charles
Nusrat Sharmeen
Sean M Rollins
Jason B Harris
Md Saruar Bhuiyan
Mohammad Arifuzzaman
Farhana Khanam
Archana Bukka
Anuj Kalsy
Steffen Porwollik
Daniel T Leung
W Abdullah Brooks
Regina C LaRocque
Elizabeth L Hohmann
Alejandro Cravioto
Tanya Logvinenko
Stephen B Calderwood
Michael McClelland
James E Graham
Firdausi Qadri
Edward T Ryan

Funding

Protecutive immunity to human cholera in BangladeshU01AI058935 · NIAID · MASSACHUSETTS GENERAL HOSPITAL · PI CALDERWOOD, STEPHEN B., RYAN, EDWARD T. · 2003 to 2014
$7.8M
High throughput NAPPA-proteoimmunomics and Vibrio cholerae vaccine developmentU01AI077883 · NIAID · MASSACHUSETTS GENERAL HOSPITAL · PI RYAN, EDWARD T. · 2008 to 2012
$5.6M
Training program in vaccine development and public healthD43TW005572 · FIC · MASSACHUSETTS GENERAL HOSPITAL · PI QADRI, FIRDAUSI, RYAN, EDWARD T. · 2000 to 2025
$5.4M
NITRIC OXIDE CYTOTOXICITY IN SALMONELLOSISR01AI039557 · NIAID · UNIVERSITY OF WASHINGTON · PI FANG, FERRIC C · 1997 to 2012
$4.1M
Comparative Genomics in the EnterobateriaceaeR01AI052237 · NIAID · WASHINGTON UNIVERSITY · PI WEINSTOCK, GEORGE M · 2002 to 2009
$4.1M
Salmonella polymicrobial interactionsR01AI073971 · NIAID · OHIO STATE UNIVERSITY · PI AHMER, BRIAN M · 2008 to 2012
$2.8M
Identification of Salmonella Genes Important for Systemic ColonizationR01AI083646 · NIAID · TEXAS A&M UNIVERSITY HEALTH SCIENCE CTR · PI ANDREWS-POLYMENIS, HELENE L · 2009 to 2012
$1.6M
Salmonella Genes Associated with Colonization of Specific HostsR01AI075093 · NIAID · VACCINE RESEARCH INSTITUTE OF SAN DIEGO · PI MCCLELLAND, MICHAEL · 2009 to 2010
$928k
The role of TcpA in cholera immunity and vaccinationK01TW007409 · FIC · MASSACHUSETTS GENERAL HOSPITAL · PI HARRIS, JASON B · 2005 to 2011
$867k
High-throughput proteomic study of protective immunity in human cholera infectionK08AI089721 · NIAID · MASSACHUSETTS GENERAL HOSPITAL · PI CHARLES, RICHELLE C · 2010 to 2014
$684k
Identification of human gene polymorphisms related to Vibrio cholerae infectionK01TW007144 · FIC · MASSACHUSETTS GENERAL HOSPITAL · PI LAROCQUE, REGINA C · 2004 to 2009
$617k
High throughput proteomic analysis of Salmonella entericaR21AI072599 · NIAID · MASSACHUSETTS GENERAL HOSPITAL · PI RYAN, EDWARD T. · 2007 to 2008
$466k
FIC NIH HHS D43 TW005572FIC NIH HHS K01 TW007144FIC NIH HHS K01 TW007409FIC NIH HHS K01 TW07144FIC NIH HHS TW005572-S1FIC NIH HHS TW05572Howard Hughes Medical InstituteNIAID NIH HHS AI039557NIAID NIH HHS AI052237NIAID NIH HHS AI058935NIAID NIH HHS AI072599NIAID NIH HHS AI073971NIAID NIH HHS AI075093NIAID NIH HHS AI077645NIAID NIH HHS AI077883NIAID NIH HHS AI083646NIAID NIH HHS AI083964NIAID NIH HHS K08 AI089721NIAID NIH HHS R01 AI039557NIAID NIH HHS R01 AI052237NIAID NIH HHS R01 AI073971NIAID NIH HHS R01 AI075093NIAID NIH HHS R01 AI083646NIAID NIH HHS R21 AI072599NIAID NIH HHS R21 AI083964NIAID NIH HHS R56 AI077645NIAID NIH HHS U01 AI058935NIAID NIH HHS U01 AI077883PHS HHS A148635
6 · The paper itself

Abstract

backgroundSalmonella enterica serotype Typhi is the cause of typhoid fever. It is a human-restricted pathogen, and few data exist on S. Typhi gene expression in humans. METHODOLOGY/PRINCIPAL

findingsWe applied an RNA capture and amplification technique, Selective Capture of Transcribed Sequences (SCOTS), and microarray hybridization to identify S. Typhi transcripts expressed in the blood of five humans infected with S. Typhi in Bangladesh. In total, we detected the expression of mRNAs for 2,046 S. Typhi genes (44% of the S. Typhi genome) in human blood; expression of 912 genes was detected in all 5 patients, and expression of 1,100 genes was detected in 4 or more patients. Identified transcripts were associated with the virulence-associated PhoP regulon, Salmonella pathogenicity islands, the use of alternative carbon and energy sources, synthesis and transport of iron, thiamine, and biotin, and resistance to antimicrobial peptides and oxidative stress. The most highly represented group were genes currently annotated as encoding proteins designated as hypothetical, unknown, or unclassified. Of the 2,046 detected transcripts, 1,320 (29% of the S. Typhi genome) had significantly different levels of detection in human blood compared to in vitro cultures; detection of 141 transcripts was significantly different in all 5 patients, and detection of 331 transcripts varied in at least 4 patients. These mRNAs encode proteins of unknown function, those involved in energy metabolism, transport and binding, cell envelope, cellular processes, and pathogenesis. We confirmed increased expression of a subset of identified mRNAs by quantitative-PCR. CONCLUSIONS/SIGNIFICANCE: We report the first characterization of bacterial transcriptional profiles in the blood of patients with typhoid fever. S. Typhi is an important global pathogen whose restricted host range has greatly inhibited laboratory studies. Our results suggest that S. Typhi uses a largely uncharacterized genetic repertoire to survive within cells and utilize alternate energy sources during infection.

Indexed as

AdolescentAdultBacteremiaBacterial ProteinsBangladeshChildChild, PreschoolGene Expression ProfilingHumansInfantMiddle AgedOligonucleotide Array Sequence AnalysisReal-Time Polymerase Chain ReactionRNA, BacterialRNA, MessengerSalmonella typhiBacterial ProteinsRNA, BacterialRNA, Messenger

Identifiers

PMID22180799
PMCPMC3236720

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.