ArticleThe Plant cell2011
Different gene families in Arabidopsis thaliana transposed in different epochs and at different frequencies throughout the rosids.
Article in The Plant cell, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
31 citing papers in PubMed, 42 citations in OpenAlex.
- Biased Retention of Environment-Responsive Genes Following Genome Fractionation.Molecular biology and evolution · 2024Article
- Excision and reinsertion of Ac macrotransposons in maize.Genetics · 2022Article
- Parallelism and convergence in post-domestication adaptation in cereal grasses.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2019Review
- Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants.Genome biology · 2019Article
- New Possibilities on the Horizon: Genome Editing Makes the Whole Genome Accessible for Changes.Frontiers in plant science · 2019Review
- Diversification of defensins and NLRs in Arabidopsis species by different evolutionary mechanisms.BMC evolutionary biology · 2017Article
- Genome-Wide Prediction of Metabolic Enzymes, Pathways, and Gene Clusters in Plants.Plant physiology · 2017Article
- The impact and origin of copy number variations in the Oryza species.BMC genomics · 2016Article
- Ancestral and more recently acquired syntenic relationships of MADS-box genes uncovered by the Physcomitrella patens pseudochromosomal genome assembly.Plant cell reports · 2016Article
- Gene Duplicability of Core Genes Is Highly Consistent across All Angiosperms.The Plant cell · 2016Article
- Large-Scale Gene Relocations following an Ancient Genome Triplication Associated with the Diversification of Core Eudicots.PloS one · 2016Article
- The pineapple genome and the evolution of CAM photosynthesis.Nature genetics · 2015Article
- SynFind: Compiling Syntenic Regions across Any Set of Genomes on Demand.Genome biology and evolution · 2015Article
- A complex interplay of tandem- and whole-genome duplication drives expansion of the L-type lectin receptor kinase gene family in the brassicaceae.Genome biology and evolution · 2015Article
- Article
- Genome-wide identification of evolutionarily conserved alternative splicing events in flowering plants.Frontiers in bioengineering and biotechnology · 2015Article
- Conservation of the abscission signaling peptide IDA during Angiosperm evolution: withstanding genome duplications and gain and loss of the receptors HAE/HSL2.Frontiers in plant science · 2015Article
- Genetic diversity analysis in a set of Caricaceae accessions using resistance gene analogues.BMC genetics · 2014Article
- A novel approach for multi-domain and multi-gene family identification provides insights into evolutionary dynamics of disease resistance genes in core eudicot plants.BMC genomics · 2014Article
- The Arabidopsis Kinome: phylogeny and evolutionary insights into functional diversification.BMC genomics · 2014Article
Corrections and comments
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Authors and funding
3 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Certain types of gene families, such as those encoding most families of transcription factors, maintain their chromosomal syntenic positions throughout angiosperm evolutionary time. Other nonsyntenic gene families are prone to deletion, tandem duplication, and transposition. Here, we describe the chromosomal positional history of all genes in Arabidopsis thaliana throughout the rosid superorder. We introduce a public database where researchers can look up the positional history of their favorite A. thaliana gene or gene family. Finally, we show that specific gene families transposed at specific points in evolutionary time, particularly after whole-genome duplication events in the Brassicales, and suggest that genes in mobile gene families are under different selection pressure than syntenic genes.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.