Evidence map›Paper›PMID 22180531›Full record

ArticleNucleic acids research2012

Structural conservation of an ancient tRNA sensor in eukaryotic glutaminyl-tRNA synthetase.

Thomas D Grant, Edward H Snell, Joseph R Luft, Erin Quartley, Stephanie Corretore, Jennifer R Wolfley, M Elizabeth Snell, Andrew Hadd, John J Perona, Eric M Phizicky and 1 more

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.9field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
  2. RNA (New York, N.Y.) · 2017
    Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. A new view on crystal harvesting.Journal of applied crystallography · 2014
    Article
  8. Article
  9. Architecture and metamorphosis.Topics in current chemistry · 2014
    Review
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Thomas D GrantHauptman-Woodward Medical Research Institute, Buffalo, NY 14203, USA.
Edward H Snell
Joseph R Luft
Erin Quartley
Stephanie Corretore
Jennifer R Wolfley
M Elizabeth Snell
Andrew Hadd
John J Perona
Eric M Phizicky
Elizabeth J Grayhack
Hauptman-Woodward Medical Research Institute · USUniversity of California, Santa Barbara · USUniversity of Rochester Medical Center · US

Funding

TOOLS FOR HIGH THROUGHPUT STRUCTURAL BIOLOGYU54GM074899 · NIGMS · HAUPTMAN-WOODWARD MEDICAL RESEARCH INST · PI DETITTA, GEORGE T · 2005 to 2010
$16.5M
Specificity in the Synthesis of Aminoacyl-tRNAR01GM063713 · NIGMS · UNIVERSITY OF CALIFORNIA SANTA BARBARA · PI PERONA, JOHN J. · 2001 to 2012
$3.2M
Development of an Expert Crystallization Knowledge SystemR01GM088396 · NIGMS · HAUPTMAN-WOODWARD MEDICAL RESEARCH INST · PI SNELL, EDWARD H · 2010 to 2014
$1.7M
NIGMS NIH HHS GM63713NIGMS NIH HHS R01 GM063713NIGMS NIH HHS R01 GM088396NIGMS NIH HHS U54 GM074899
6 · The paper itself

Abstract

In all organisms, aminoacyl tRNA synthetases covalently attach amino acids to their cognate tRNAs. Many eukaryotic tRNA synthetases have acquired appended domains, whose origin, structure and function are poorly understood. The N-terminal appended domain (NTD) of glutaminyl-tRNA synthetase (GlnRS) is intriguing since GlnRS is primarily a eukaryotic enzyme, whereas in other kingdoms Gln-tRNA(Gln) is primarily synthesized by first forming Glu-tRNA(Gln), followed by conversion to Gln-tRNA(Gln) by a tRNA-dependent amidotransferase. We report a functional and structural analysis of the NTD of Saccharomyces cerevisiae GlnRS, Gln4. Yeast mutants lacking the NTD exhibit growth defects, and Gln4 lacking the NTD has reduced complementarity for tRNA(Gln) and glutamine. The 187-amino acid Gln4 NTD, crystallized and solved at 2.3 Å resolution, consists of two subdomains, each exhibiting an extraordinary structural resemblance to adjacent tRNA specificity-determining domains in the GatB subunit of the GatCAB amidotransferase, which forms Gln-tRNA(Gln). These subdomains are connected by an apparent hinge comprised of conserved residues. Mutation of these amino acids produces Gln4 variants with reduced affinity for tRNA(Gln), consistent with a hinge-closing mechanism proposed for GatB recognition of tRNA. Our results suggest a possible origin and function of the NTD that would link the phylogenetically diverse mechanisms of Gln-tRNA(Gln) synthesis.

Indexed as

Amino Acid SequenceAmino Acyl-tRNA SynthetasesModels, MolecularMolecular Sequence DataProtein Structure, TertiaryRNA, Transfer, GlnRNA, Transfer, GluSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSequence AlignmentSequence DeletionAmino Acyl-tRNA Synthetasesglutaminyl-tRNA synthetaseRNA, Transfer, GlnRNA, Transfer, GluSaccharomyces cerevisiae Proteins

Identifiers

PMID22180531
PMCPMC3333875
OpenAlexW2090079209

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.