Evidence map›Paper›PMID 22179761›Full record

ArticleInterdisciplinary sciences, computational life sciences2011

Concentration dependence of NaCl ion distributions around DPPC lipid bilayers.

Jorge R Rodriguez, Angel E García

Abstract read
In one paragraph

Article in Interdisciplinary sciences, computational life sciences, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Jorge R RodriguezDepartment of Physics, Applied Physics and Astronomy, Center for Biotechnology and Interdisciplinary Studies, Rensselaer Polytechnic Institute, Troy, NY 12180, USA.
Angel E García

Funding

Simulation studies of the mechanism of translocation of cell penetrating peptidesR01GM086801 · NIGMS · RENSSELAER POLYTECHNIC INSTITUTE · PI GARCIA, ANGEL E · 2010 to 2013
$1.2M
NIGMS NIH HHS GM086801NIGMS NIH HHS R01 GM086801
6 · The paper itself

Abstract

We study the coordination of excess NaCl to zwitterionic DPPC lipid bilayers using molecular dynamics simulations. We find that Na ions directly coordinate with the DPPC lipid carbonyl groups. As the number of excess ions increases, the number of coordinated ions increases, until it reaches a plateau at a ratio near 1 ion per every four lipids at 310 K, and 1 ion per every six lipids at 323 K. The area per lipid decreases as the number of excess ions is increased. For low number of ions per lipids (1:16 and 1:8), most Na ions are bound to the lipid carbonyls, while the Cl form an ionic cloud around the lipid choline groups. As a result of the Na binding, the lipid has an effective positive charge density. The residence time of Na ions bound to the lipid is longer than 40 ns, while Cl ions exchange faster than the nanoseconds timescale. We find that the bound Na ions replace ordered water around the carbonyls. The net linear charge density near the carbonyl groups stays positive, regardless of the presence of excess salt in the solution.

Indexed as

1,2-DipalmitoylphosphatidylcholineIonsLipid BilayersModels, BiologicalMolecular Dynamics SimulationSaltsSodiumSodium ChlorideSolutions1,2-DipalmitoylphosphatidylcholineIonsLipid BilayersSaltsSodiumSodium ChlorideSolutions

Identifiers

PMID22179761
PMCPMC3527843

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.