Evidence map›Paper›PMID 22178928›Full record

ArticleNature2011

A sensing array of radically coupled genetic 'biopixels'.

Arthur Prindle, Phillip Samayoa, Ivan Razinkov, Tal Danino, Lev S Tsimring, Jeff Hasty

Abstract read
In one paragraph

Article in Nature, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 135 papers.

0numbers the graph read from it
0cells of the map it votes in
135citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

135 citing papers in PubMed.

  1. Article
  2. Article
  3. Living Hydrogels: Harnessing Microorganism-Material Synergy for Next-Generation Therapeutics.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Review
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Non-Hermitian Global Synchronization.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2025
    Article
  10. Article
  11. Emergence of synchronized growth oscillations in filamentous fungi.Journal of the Royal Society, Interface · 2024
    Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Applications of synthetic biology in medical and pharmaceutical fields.Signal transduction and targeted therapy · 2023
    Review
  19. Article
  20. Article

75 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors.

Arthur PrindleDepartment of Bioengineering, University of California, San Diego, La Jolla, California 92093, USA.
Phillip Samayoa
Ivan Razinkov
Tal Danino
Lev S Tsimring
Jeff Hasty

Funding

SYNTHETIC SYSTEMSP50GM085764 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI HASTY, JEFF M, IDEKER, TREY · 2010 to 2018
$23.3M
Engineered Gene Circuits for Basic Science and BiotechnologyR01GM069811 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI HASTY, JEFF M, TSIMRING, LEV S · 2004 to 2025
$13.6M
NIGMS NIH HHS P50 GM085764NIGMS NIH HHS P50GM085764NIGMS NIH HHS R01 GM069811NIGMS NIH HHS R01GM69811
6 · The paper itself

Abstract

Although there has been considerable progress in the development of engineering principles for synthetic biology, a substantial challenge is the construction of robust circuits in a noisy cellular environment. Such an environment leads to considerable intercellular variability in circuit behaviour, which can hinder functionality at the colony level. Here we engineer the synchronization of thousands of oscillating colony 'biopixels' over centimetre-length scales through the use of synergistic intercellular coupling involving quorum sensing within a colony and gas-phase redox signalling between colonies. We use this platform to construct a liquid crystal display (LCD)-like macroscopic clock that can be used to sense arsenic via modulation of the oscillatory period. Given the repertoire of sensing capabilities of bacteria such as Escherichia coli, the ability to coordinate their behaviour over large length scales sets the stage for the construction of low cost genetic biosensors that are capable of detecting heavy metals and pathogens in the field.

Indexed as

Biosensing TechniquesGene Expression Regulation, BacterialAmpicillinAnti-Bacterial AgentsArsenicBacterial ProteinsBiological ClocksCatalaseEscherichia coliHydrogen PeroxideKanamycinLiquid CrystalsNADH DehydrogenaseOxidation-ReductionQuorum SensingSuperoxide DismutaseAmpicillinAnti-Bacterial AgentsArsenicBacterial ProteinsCatalaseHydrogen PeroxideKanamycinNADH DehydrogenaseNADH dehydrogenase IISodA protein, BacteriaSuperoxide DismutaseThiourea

Identifiers

PMID22178928
PMCPMC3259005

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.