Evidence map›Paper›PMID 22178246›Full record

ArticleDevelopmental biology2012

Regulation of a duplicated locus: Drosophila sloppy paired is replete with functionally overlapping enhancers.

Miki Fujioka, James B Jaynes

Abstract read
In one paragraph

Article in Developmental biology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed.

  1. Article
  2. Breaking anterior-posterior symmetry in the moth flybioRxiv : the preprint server for biology · 2025
    Article
  3. Article
  4. Article
  5. Enhancer redundancy in development and disease.Nature reviews. Genetics · 2021
    Review
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  8. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Miki FujiokaDept. of Biochemistry and Molecular Biology, Kimmel Cancer Center, Thomas Jefferson University, Philadelphia, PA 19107, USA.
James B Jaynes

Funding

X-Ray Crystallography and Macromolecular CharacterizationP30CA056036 · NCI · THOMAS JEFFERSON UNIVERSITY · PI DANIEL P SILVER · 1995 to 2026
$94.8M
TRANSCRIPTIONAL REGULATORY MECHANISMS DURING DEVELOPMENTR01GM050231 · NIGMS · THOMAS JEFFERSON UNIVERSITY · PI JAYNES, JAMES B · 1995 to 2013
$3.3M
NCI NIH HHS P30 CA056036NCI NIH HHS P30CA56036NIGMS NIH HHS 2R01GM050231NIGMS NIH HHS R01 GM050231
6 · The paper itself

Abstract

In order to investigate regulation and redundancy within the sloppy paired (slp) locus, we analyzed 30 kilobases of DNA encompassing the tandem, coordinately regulated slp1 and slp2 transcription units. We found a remarkable array of stripe enhancers with overlapping activities surrounding the slp1 transcription unit, and, unexpectedly, glial cell enhancers surrounding slp2. The slp stripe regulatory region generates 7 stripes at blastoderm, and later 14 stripes that persist throughout embryogenesis. Phylogenetic analysis among drosophilids suggests that the multiplicity of stripe enhancers did not evolve through recent duplication. Most of the direct integration among cis-regulatory modules appears to be simply additive, with one notable exception. Despite the apparent redundancy among stripe enhancers, transgenic rescue suggests that most are required for full function, to maintain wingless expression and parasegment boundaries throughout embryogenesis. Transgenic rescue also reveals indirect positive autoregulation by the 7 early stripes, without which alternate stripes within the 14-stripe pattern are lost, leading to embryos with a pair-rule phenotype.

Indexed as

Evolution, MolecularAnimalsBase SequenceComputational BiologyConserved SequenceDrosophila melanogasterDrosophila ProteinsEnhancer Elements, GeneticGene Expression Regulation, DevelopmentalGenes, DuplicateIn Situ HybridizationMolecular Sequence DataNeurogliaPhylogenySequence Analysis, DNATranscription FactorsDrosophila Proteinsslp1 protein, Drosophilaslp2 protein, DrosophilaTranscription Factors

Identifiers

PMID22178246
PMCPMC3265641

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.