Evidence map›Paper›PMID 22178227›Full record

ReviewBiochimica et biophysica acta2012

Radical reactions of thiamin pyrophosphate in 2-oxoacid oxidoreductases.

George H Reed, Stephen W Ragsdale, Steven O Mansoorabadi

Open access · greenAbstract readReview
In one paragraph

Review in Biochimica et biophysica acta, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
0.2field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 26 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Binding site for coenzyme A revealed in the structure of pyruvate:ferredoxin oxidoreductase fromProceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  6. Article
  7. Review
  8. Article
  9. One-carbon chemistry of oxalate oxidoreductase captured by X-ray crystallography.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  10. Article
  11. Article
  12. Article
  13. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 3 institutions in 1 country.

George H ReedDepartment of Biochemistry, University of Wisconsin-Madison, 1710 University Avenue, Madison, WI 53726, USA. ghreed@wisc.edu
Stephen W Ragsdale
Steven O Mansoorabadi
The University of Texas at Austin · USUniversity of Michigan–Ann Arbor · USUniversity of Wisconsin–Madison · US

Funding

Three-Membered Ring Metabolites, Inhibition &FormationR01GM040541 · NIGMS · UNIVERSITY OF TEXAS AUSTIN · PI LIU, HUNG-WEN · 1989 to 2023
$7.4M
Enzymology of the Reductive Acetyl-CoA PathwayR37GM039451 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI RAGSDALE, STEPHEN WILEY · 2012 to 2021
$4.0M
MECHANISMS OF METHYL TRANSFERS IN ACETYL-COA SYNTHESISR01GM039451 · NIGMS · UNIVERSITY OF WISCONSIN MILWAUKEE · PI RAGSDALE, STEPHEN WILEY · 1991 to 2011
$3.6M
MECHANISMS OF METHYL TRANSFERS IN ACETYL-COA SYNTHESISR29GM039451 · NIGMS · UNIVERSITY OF WISCONSIN MILWAUKEE · PI RAGSDALE, STEPHEN W · 1988 to 1991
–
NIGMS NIH HHS GM39451NIGMS NIH HHS GM40541NIGMS NIH HHS R01 GM039451NIGMS NIH HHS R01 GM040541NIGMS NIH HHS R37 GM039451
6 · The paper itself

Abstract

Thiamin pyrophosphate (TPP) is essential in carbohydrate metabolism in all forms of life. TPP-dependent decarboxylation reactions of 2-oxo-acid substrates result in enamine adducts between the thiazolium moiety of the coenzyme and decarboxylated substrate. These central enamine intermediates experience different fates from protonation in pyruvate decarboxylase to oxidation by the 2-oxoacid dehydrogenase complexes, the pyruvate oxidases, and 2-oxoacid oxidoreductases. Virtually all of the TPP-dependent enzymes, including pyruvate decarboxylase, can be assayed by 1-electron redox reactions linked to ferricyanide. Oxidation of the enamines is thought to occur via a 2-electron process in the 2-oxoacid dehydrogenase complexes, wherein acyl group transfer is associated with reduction of the disulfide of the lipoamide moiety. However, discrete 1-electron steps occur in the oxidoreductases, where one or more [4Fe-4S] clusters mediate the electron transfer reactions to external electron acceptors. These radical intermediates can be detected in the absence of the acyl-group acceptor, coenzyme A (CoASH). The π-electron system of the thiazolium ring stabilizes the radical. The extensively delocalized character of the radical is evidenced by quantitative analysis of nuclear hyperfine splitting tensors as detected by electron paramagnetic resonance (EPR) spectroscopy and by electronic structure calculations. The second electron transfer step is markedly accelerated by the presence of CoASH. While details of the second electron transfer step and its facilitation by CoASH remain elusive, expected redox properties of potential intermediates limit possible scenarios. This article is part of a Special Issue entitled: Radical SAM enzymes and Radical Enzymology.

Indexed as

ElectronsBacterial ProteinsBiocatalysisCoenzyme AFree RadicalsIron-Sulfur ProteinsModels, MolecularOxidation-ReductionPyruvate SynthaseThiamine PyrophosphateBacterial ProteinsCoenzyme AFree RadicalsIron-Sulfur ProteinsPyruvate SynthaseThiamine Pyrophosphate

Identifiers

PMID22178227
PMCPMC3438339
OpenAlexW2027869975

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.