Evidence map›Paper›PMID 22174692›Full record

ArticlePLoS pathogens2011

HIV-1 capsid-cyclophilin interactions determine nuclear import pathway, integration targeting and replication efficiency.

Torsten Schaller, Karen E Ocwieja, Jane Rasaiyaah, Amanda J Price, Troy L Brady, Shoshannah L Roth, Stéphane Hué, Adam J Fletcher, KyeongEun Lee, Vineet N KewalRamani and 5 more

Open access · goldAbstract read
In one paragraph

Article in PLoS pathogens, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 352 papers.

0numbers the graph read from it
0cells of the map it votes in
352citing papers in PubMed
13.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

352 citing papers in PubMed, 477 citations in OpenAlex.

  1. CypA is a molecular barrier to HIV emergence from Eastern chimpanzees.bioRxiv : the preprint server for biology · 2026
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  15. Viral interference of nucleocytoplasmic transport.The Journal of biological chemistry · 2025
    Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article

292 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 6 institutions in 2 countries.

Torsten SchallerDivision of Infection and Immunity, University College London Medical Research Council Centre for Medical Molecular Virology, London, United Kingdom.
Karen E Ocwieja
Jane Rasaiyaah
Amanda J Price
Troy L Brady
Shoshannah L Roth
Stéphane Hué
Adam J Fletcher
KyeongEun Lee
Vineet N KewalRamani
Mahdad Noursadeghi
Richard G Jenner
Leo C James
Frederic D Bushman
Greg J Towers
Medical Research Council · GBUniversity of Pennsylvania · USUniversity College London · GBFrederick National Laboratory for Cancer Research · USMRC Laboratory of Molecular Biology · GBNational Cancer Institute · US

Funding

Molecular Virology and Systems Biology Screening CoreP01AI090935 · NIAID · SANFORD BURNHAM PREBYS MEDICAL DISCOVERY INSTITUTE · PI YOUNG, JOHN A T · 2010 to 2014
$20.4M
The role of CPSF6 in HIV-1 infectionZIABC010487 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI KEWALRAMANI, VINEET N · 2009 to 2025
$13.0M
Favored Sites for HIV Integration in the Human GenomeR01AI052845 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI BUSHMAN, FREDERIC D · 2002 to 2017
$5.6M
Massively Parallel Analysis of Integration in Therapeutic Gene TransferR01AI082020 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI BUSHMAN, FREDERIC D · 2009 to 2018
$3.5M
Medical Research Council G0600081Medical Research Council G0801172Medical Research Council G0900950Medical Research Council G9721629Medical Research Council MC_U105181010NIAID NIH HHS AI082020NIAID NIH HHS AI52845NIAID NIH HHS P01 AI090935NIAID NIH HHS R01 AI052845NIAID NIH HHS R01 AI082020Wellcome Trust 090940
6 · The paper itself

Abstract

Lentiviruses such as HIV-1 traverse nuclear pore complexes (NPC) and infect terminally differentiated non-dividing cells, but how they do this is unclear. The cytoplasmic NPC protein Nup358/RanBP2 was identified as an HIV-1 co-factor in previous studies. Here we report that HIV-1 capsid (CA) binds directly to the cyclophilin domain of Nup358/RanBP2. Fusion of the Nup358/RanBP2 cyclophilin (Cyp) domain to the tripartite motif of TRIM5 created a novel inhibitor of HIV-1 replication, consistent with an interaction in vivo. In contrast to CypA binding to HIV-1 CA, Nup358 binding is insensitive to inhibition with cyclosporine, allowing contributions from CypA and Nup358 to be distinguished. Inhibition of CypA reduced dependence on Nup358 and the nuclear basket protein Nup153, suggesting that CypA regulates the choice of the nuclear import machinery that is engaged by the virus. HIV-1 cyclophilin-binding mutants CA G89V and P90A favored integration in genomic regions with a higher density of transcription units and associated features than wild type virus. Integration preference of wild type virus in the presence of cyclosporine was similarly altered to regions of higher transcription density. In contrast, HIV-1 CA alterations in another patch on the capsid surface that render the virus less sensitive to Nup358 or TRN-SR2 depletion (CA N74D, N57A) resulted in integration in genomic regions sparse in transcription units. Both groups of CA mutants are impaired in replication in HeLa cells and human monocyte derived macrophages. Our findings link HIV-1 engagement of cyclophilins with both integration targeting and replication efficiency and provide insight into the conservation of viral cyclophilin recruitment.

Indexed as

Virus ReplicationActive Transport, Cell NucleusBlotting, WesternCapsid ProteinsCell LineCell NucleusCyclophilin AHeLa CellsHIV-1HIV InfectionsHumansMacrophagesMolecular ChaperonesNuclear Pore Complex ProteinsReverse Transcriptase Polymerase Chain ReactionCapsid ProteinsCyclophilin AMolecular ChaperonesNuclear Pore Complex Proteinsran-binding protein 2

Identifiers

PMID22174692
PMCPMC3234246
OpenAlexW2122523609

What OpenQuestion holds

Textmetadata
LicenceCC0
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.