Evidence map›Paper›PMID 22174628›Full record

ArticleInternational journal of molecular sciences2011

Evaluation of internal reference genes for quantitative expression analysis by real-time PCR in ovine whole blood.

Simone Peletto, Simone Bertuzzi, Chiara Campanella, Paola Modesto, Maria Grazia Maniaci, Claudio Bellino, Dario Ariello, Antonio Quasso, Maria Caramelli, Pier Luigi Acutis

Abstract read
In one paragraph

Article in International journal of molecular sciences, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed.

  1. Article
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  3. Evaluation ofVaccines · 2025
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  19. Reference gene selection for quantitative PCR studies in sheep neutrophils.International journal of molecular sciences · 2013
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Simone PelettoExperimental Zooprophylactic Institute of Piemonte, Liguria and Valle d'Aosta, 10154 Turin, Italy; E-Mails: simonebertuzzi@yahoo.it (S.B.); chiara.campanella@izsto.it (C.C.); paola.modesto@izsto.it (P.M.); mariagrazia.maniaci@izsto.it (M.G.M.); maria.caramelli@izsto.it (M.C.); pierluigi.acutis@izsto.it (P.L.A.).
Simone Bertuzzi
Chiara Campanella
Paola Modesto
Maria Grazia Maniaci
Claudio Bellino
Dario Ariello
Antonio Quasso
Maria Caramelli
Pier Luigi Acutis

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The use of reference genes is commonly accepted as the most reliable approach to normalize qRT-PCR and to reduce possible errors in the quantification of gene expression. The most suitable reference genes in sheep have been identified for a restricted range of tissues, but no specific data on whole blood are available. The aim of this study was to identify a set of reference genes for normalizing qRT-PCR from ovine whole blood. We designed 11 PCR assays for commonly employed reference genes belonging to various functional classes and then determined their expression stability in whole blood samples from control and disease-stressed sheep. SDHA and YWHAZ were considered the most suitable internal controls as they were stably expressed regardless of disease status according to both geNorm and NormFinder software; furthermore, geNorm indicated SDHA/HPRT, YWHAZ/GAPDH and SDHA/YWHAZ as the best reference gene combinations in control, disease-stressed and combined sheep groups, respectively. Our study provides a validated panel of optimal control genes which may be useful for the identification of genes differentially expressed by qRT-PCR in a readily accessible tissue, with potential for discovering new physiological and disease markers and as a tool to improve production traits (e.g., by identifying expression Quantitative Trait Loci). An additional outcome of the study is a set of intron-spanning primer sequences suitable for gene expression experiments employing SYBR Green chemistry on other ovine tissues and cells.

Indexed as

AnimalsDNA PrimersGene ExpressionGene Expression ProfilingReal-Time Polymerase Chain ReactionReference StandardsSelection, GeneticSequence Analysis, DNASheepSheep DiseasesDNA PrimersnormalizationOvis ariesreal-time qPCRreference geneswhole blood

Identifiers

PMID22174628
PMCPMC3233434

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.