Evidence map›Paper›PMID 22174586›Full record

ArticleEnvironmental health insights2011

Visual analytics of surveillance data on foodborne vibriosis, United States, 1973-2010.

Jennifer N Sims, Raphael D Isokpehi, Gabrielle A Cooper, Michael P Bass, Shyretha D Brown, Alison L St John, Paul A Gulig, Hari H P Cohly

Open access · goldAbstract read
In one paragraph

Article in Environmental health insights, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed, 1 pooled it
1.0field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 1 synthesis or guideline pooled it, 25 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Review
  4. Article
  5. Recovery of Pasteurization-ResistantFoods (Basel, Switzerland) · 2022
    Article
  6. Article
  7. Article
  8. Data visualisation in surveillance for injury prevention and control: conceptual bases and case studies.Injury prevention : journal of the International Society for Child and Adolescent Injury Prevention · 2016
    Article
  9. Review
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Jennifer N SimsCenter for Bioinformatics & Computational Biology, Jackson State University, Jackson, Mississippi, USA.
Raphael D Isokpehi
Gabrielle A Cooper
Michael P Bass
Shyretha D Brown
Alison L St John
Paul A Gulig
Hari H P Cohly
Jackson State University · USUniversity of Florida · US

Funding

VIRULENCE MECHANISMS IN ESCHERICHIA COLIP20RR016460 · NCRR · UNIV OF ARKANSAS FOR MED SCIS · PI HENSLEY, LORI · 2001 to 2011
$33.1M
TOUGALOO PROTEOMICSP20RR016476 · NCRR · UNIVERSITY OF SOUTHERN MISSISSIPPI · PI SHEARER, GLEN · 2001 to 2011
$30.4M
TRANSCRIPTOMICS OF GIARDIA LAMBLIAG12RR013459 · NCRR · JACKSON STATE UNIVERSITY · PI TCHOUNWOU, PAUL B. · 1998 to 2011
$18.0M
Using Mass Spectroscopy to Characterize Transcription Proteins and F2-IsoprostaneP20MD002725 · NIMHD · TOUGALOO COLLEGE · PI MAO, JINGHE · 2007 to 2011
$3.9M
Bioinformatics Programs at Minority InstitutionsT36GM095335 · NIGMS · CARNEGIE-MELLON UNIVERSITY · PI ROPELEWSKI, ALEXANDER J · 2011 to 2015
$3.2M
NCRR NIH HHS G12 RR013459NCRR NIH HHS P20 RR016460NCRR NIH HHS P20 RR016476NIGMS NIH HHS T36 GM095335NIMHD NIH HHS P20 MD002725
6 · The paper itself

Abstract

Foodborne illnesses caused by microbial and chemical contaminants in food are a substantial health burden worldwide. In 2007, human vibriosis (non-cholera Vibrio infections) became a notifiable disease in the United States. In addition, Vibrio species are among the 31 major known pathogens transmitted through food in the United States. Diverse surveillance systems for foodborne pathogens also track outbreaks, illnesses, hospitalization and deaths due to non-cholera vibrios. Considering the recognition of vibriosis as a notifiable disease in the United States and the availability of diverse surveillance systems, there is a need for the development of easily deployed visualization and analysis approaches that can combine diverse data sources in an interactive manner. Current efforts to address this need are still limited. Visual analytics is an iterative process conducted via visual interfaces that involves collecting information, data preprocessing, knowledge representation, interaction, and decision making. We have utilized public domain outbreak and surveillance data sources covering 1973 to 2010, as well as visual analytics software to demonstrate integrated and interactive visualizations of data on foodborne outbreaks and surveillance of Vibrio species. Through the data visualization, we were able to identify unique patterns and/or novel relationships within and across datasets regarding (i) causative agent; (ii) foodborne outbreaks and illness per state; (iii) location of infection; (iv) vehicle (food) of infection; (v) anatomical site of isolation of Vibrio species; (vi) patients and complications of vibriosis; (vii) incidence of laboratory-confirmed vibriosis and V. parahaemolyticus outbreaks. The additional use of emerging visual analytics approaches for interaction with data on vibriosis, including non-foodborne related disease, can guide disease control and prevention as well as ongoing outbreak investigations.

Indexed as

bioinformaticsdata visualizationfoodborne diseaseshuman-computer interactionsurveillanceVibrio speciesvisual analytics

Identifiers

PMID22174586
PMCPMC3236002
OpenAlexW2038848480

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.