Evidence map›Paper›PMID 22174413›Full record

ArticleThe Journal of biological chemistry2012

Nrf2b, novel zebrafish paralog of oxidant-responsive transcription factor NF-E2-related factor 2 (NRF2).

Alicia R Timme-Laragy, Sibel I Karchner, Diana G Franks, Matthew J Jenny, Rachel C Harbeitner, Jared V Goldstone, Andrew G McArthur, Mark E Hahn

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 57 papers.

0numbers the graph read from it
0cells of the map it votes in
57citing papers in PubMed
1.1field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

57 citing papers in PubMed, 103 citations in OpenAlex.

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  19. HLife (Basel, Switzerland) · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Alicia R Timme-LaragyBiology Department, Woods Hole Oceanographic Institution, Woods Hole, Massachusetts 02543, USA. atimmelaragy@whoi.edu
Sibel I Karchner
Diana G Franks
Matthew J Jenny
Rachel C Harbeitner
Jared V Goldstone
Andrew G McArthur
Mark E Hahn
Woods Hole Oceanographic Institution · US

Funding

AHR Signaling in Mammalian and Non-Mammalian ModelsR01ES006272 · NIEHS · WOODS HOLE OCEANOGRAPHIC INSTITUTION · PI HAHN, MARK E · 1999 to 2014
$4.1M
CYP Genes and the Generation of Oxidative StressR01ES015912 · NIEHS · WOODS HOLE OCEANOGRAPHIC INSTITUTION · PI STEGEMAN, JOHN J · 2007 to 2011
$3.1M
Mechanisms of Embryo Response to Oxidative StressR01ES016366 · NIEHS · WOODS HOLE OCEANOGRAPHIC INSTITUTION · PI HAHN, MARK E · 2009 to 2013
$1.9M
Metal-Regulatory Factor 1 (MTF-1) Role in Development and Stress ResponseR00ES017044 · NIEHS · UNIVERSITY OF ALABAMA IN TUSCALOOSA · PI JENNY, MATTHEW J. · 2009 to 2011
$729k
Differential Sensitivity to Oxidative Stress during Embryonic DevelopmentF32ES017585 · NIEHS · WOODS HOLE OCEANOGRAPHIC INSTITUTION · PI TIMME-LARAGY, ALICIA R · 2009 to 2011
$154k
NIEHS NIH HHS F32 ES017585NIEHS NIH HHS F32ES017585NIEHS NIH HHS R00 ES017044NIEHS NIH HHS R00ES017044NIEHS NIH HHS R01 ES006272NIEHS NIH HHS R01ES006272NIEHS NIH HHS R01 ES015912NIEHS NIH HHS R01ES015912NIEHS NIH HHS R01 ES016366NIEHS NIH HHS R01ES016366
6 · The paper itself

Abstract

NF-E2-related factor 2 (NRF2; also called NFE2L2) and related NRF family members regulate antioxidant defenses by activating gene expression via antioxidant response elements (AREs), but their roles in embryonic development are not well understood. We report here that zebrafish (Danio rerio), an important developmental model species, possesses six nrf genes, including duplicated nrf1 and nrf2 genes. We cloned a novel zebrafish nrf2 paralog, nrf2b. The predicted Nrf2b protein sequence shares several domains with the original Nrf2 (now Nrf2a) but lacks the Neh4 transactivation domain. Zebrafish-human comparisons demonstrate conserved synteny involving nrf2 and hox genes, indicating that nrf2a and nrf2b are co-orthologs of human NRF2. nrf2a and nrf2b displayed distinct patterns of expression during embryonic development; nrf2b was more highly expressed at all stages. Embryos in which Nrf2a expression had been knocked down with morpholino oligonucleotides were more sensitive to tert-butylhydroperoxide but not tert-butylhydroquinone, whereas knockdown of Nrf2b did not affect sensitivity of embryos to either chemical. Gene expression profiling by microarray identified a specific role for Nrf2b as a negative regulator of several genes, including p53, cyclin G1, and heme oxygenase 1, in embryos. Nrf2a and Nrf2b exhibited different mechanisms of cross-talk with the Ahr2 signaling pathway. Together, these results demonstrate distinct roles for nrf2a and nrf2b, consistent with subfunction partitioning, and identify a novel negative regulatory role for Nrf2b during development. The identification of zebrafish nrf2 co-orthologs will facilitate new understanding of the multiple roles of NRF2 in protecting vertebrate embryos from oxidative damage.

Indexed as

AnimalsAntioxidantsEmbryo, NonmammalianGene DuplicationGene Expression Regulation, EnzymologicGene Knockdown TechniquesHumansHydroquinonesMorpholinosNF-E2-Related Factor 2Oxidation-ReductionOxidative StressProtein Structure, Tertiarytert-ButylhydroperoxideZebrafishZebrafish Proteins2-tert-butylhydroquinoneAntioxidantsHydroquinonesMorpholinosnfe2l2a protein, zebrafishNFE2L2 protein, humanNF-E2-Related Factor 2tert-ButylhydroperoxideZebrafish Proteins

Identifiers

PMID22174413
PMCPMC3281635
OpenAlexW1976709591

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.