Evidence map›Paper›PMID 22174071›Full record

ArticleGenetics2012

Stringent analysis of gene function and protein-protein interactions using fluorescently tagged genes.

Ralph A Neumüller, Frederik Wirtz-Peitz, Stella Lee, Young Kwon, Michael Buckner, Roger A Hoskins, Koen J T Venken, Hugo J Bellen, Stephanie E Mohr, Norbert Perrimon

Abstract read
In one paragraph

Article in Genetics, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 67 papers.

0numbers the graph read from it
0cells of the map it votes in
67citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

67 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Genetic and Epigenetic Regulation ofJournal of developmental biology · 2023
    Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Tagging Drosophila Proteins with Genetically Encoded Fluorophores.Methods in molecular biology (Clifton, N.J.) · 2022
    Article
  18. Article
  19. Article
  20. Article

7 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Ralph A NeumüllerDepartment of Genetics, Harvard Medical School, Boston, Massachusetts 02115, USA.
Frederik Wirtz-Peitz
Stella Lee
Young Kwon
Michael Buckner
Roger A Hoskins
Koen J T Venken
Hugo J Bellen
Stephanie E Mohr
Norbert Perrimon

Funding

New collections of dsRNAs and overexpression miRNA constructs to supplement RNAiR01GM067761 · NIGMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI PERRIMON, NORBERT · 2003 to 2019
$15.5M
Drosophila Transgenic RNAi Resource ProjectR01GM084947 · NIGMS · HARVARD MEDICAL SCHOOL · PI PERRIMON, NORBERT · 2008 to 2019
$9.8M
Howard Hughes Medical InstituteNIGMS NIH HHS GM067761NIGMS NIH HHS R01 GM067761NIGMS NIH HHS R01-GM067761NIGMS NIH HHS R01 GM084947NIGMS NIH HHS R01-GM084947
6 · The paper itself

Abstract

In Drosophila collections of green fluorescent protein (GFP) trap lines have been used to probe the endogenous expression patterns of trapped genes or the subcellular localization of their protein products. Here, we describe a method, based on nonoverlapping, highly specific, shRNA transgenes directed against GFP, that extends the utility of these collections to loss-of-function studies. Furthermore, we used a MiMIC transposon to generate GFP traps in Drosophila cell lines with distinct subcellular localization patterns, which will permit high-throughput screens using fluorescently tagged proteins. Finally, we show that fluorescent traps, paired with recombinant nanobodies and mass spectrometry, allow the study of endogenous protein complexes in Drosophila.

Indexed as

Fluorescent DyesGreen Fluorescent ProteinsAnimalsCell LineCell SurvivalDrosophilaDrosophila ProteinsEmbryo, NonmammalianFemaleGene OrderGene SilencingMultiprotein ComplexesPeptide Elongation FactorsProtein BindingProtein Interaction MappingRecombinant Fusion ProteinsDrosophila ProteinsFluorescent DyesGreen Fluorescent ProteinsMultiprotein ComplexesPeptide Elongation FactorsRecombinant Fusion ProteinsRNA, Small InterferingSpt6 protein, Drosophila

Identifiers

PMID22174071
PMCPMC3296255

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.