Evidence map›Paper›PMID 22170739›Full record

ArticleGenes, chromosomes & cancer2012

Aberrantly methylated PKP1 in the progression of Barrett's esophagus to esophageal adenocarcinoma.

Andrew M Kaz, Yanxin Luo, Slavomir Dzieciatkowski, Amitabh Chak, Joseph E Willis, Melissa P Upton, Rom S Leidner, William M Grady

Abstract read
In one paragraph

Article in Genes, chromosomes & cancer, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 34 citations in OpenAlex.

  1. Biomarker Use in Barrett's Esophagus Surveillance.The American journal of gastroenterology · 2026
    Review
  2. Current Concepts for Diagnosing Non-Dysplastic and Dysplastic Barrett's Esophagus.Gastrointestinal endoscopy clinics of North America · 2026
    Review
  3. Emerging Biomarkers for Managing Barrett's Esophagus.Gastrointestinal endoscopy clinics of North America · 2026
    Review
  4. Article
  5. Article
  6. Review
  7. Review
  8. Article
  9. Article
  10. Epigenetically Silenced Candidate Tumor Suppressor Genes in Prostate Cancer: Identified by Modeling Methylation Stratification and Applied to Progression Prediction.Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology · 2019
    Article
  11. Review
  12. Article
  13. Epigenetic silencing of TPM2 contributes to colorectal cancer progression upon RhoA activation.Tumour biology : the journal of the International Society for Oncodevelopmental Biology and Medicine · 2016
    Article
  14. Plakophilin 1-deficient cells upregulate SPOCK1: implications for prostate cancer progression.Tumour biology : the journal of the International Society for Oncodevelopmental Biology and Medicine · 2015
    Article
  15. Epigenetics in the Pathogenesis of Esophageal Adenocarcinoma.Clinical and translational science · 2015
    Article
  16. Review
  17. Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 6 institutions in 3 countries.

Andrew M KazDivision of Clinical Research, Fred Hutchinson Cancer Research Center, Seattle, WA 98109, USA. akaz@fhcrc.org
Yanxin Luo
Slavomir Dzieciatkowski
Amitabh Chak
Joseph E Willis
Melissa P Upton
Rom S Leidner
William M Grady
University of Washington · USUniversity School · USCape Town HVTN Immunology Laboratory / Hutchinson Centre Research Institute of South Africa · ZACase Western Reserve University · USFred Hutch Cancer Center · USSun Yat-sen University · CN

Funding

Translational Bioimaging Core Shared ResourceP30CA015704 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI Marian Esvelt · 1985 to 2026
$296.4M
Targeting 15-PGDH in Colon Cancer Prognosis, Prediction, Treatment and PreventionP50CA150964 · NCI · CASE WESTERN RESERVE UNIVERSITY · PI MARKOWITZ, SANFORD D. · 2011 to 2022
$24.6M
TRANSLATIONAL RESEARCH ONCOLOGY TRAINING GRANTK12CA076917 · NCI · CASE WESTERN RESERVE UNIVERSITY · PI GERSON, STANTON L. · 1997 to 2022
$14.2M
Whole Exome Approaches for Esophageal Adenocarcinoma Susceptibility GenesU54CA163060 · NCI · CASE WESTERN RESERVE UNIVERSITY · PI CHAK, AMITABH, GUDA, KISHORE · 2011 to 2022
$14.0M
Trans-NetworkU54CA143862 · NCI · ARIZONA STATE UNIVERSITY-TEMPE CAMPUS · PI NEWMAN, TIMOTHY · 2009 to 2013
$8.4M
Identify and validate novel epigenetic molecular markers for colorectal neoplasmU01CA152756 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI GRADY, WILLIAM MALLORY, GUDA, KISHORE · 2010 to 2021
$6.7M
PATIENT ORIENTED RESEARCH IN BARRETT'S ESOPHAGUSK24DK002800 · NIDDK · CASE WESTERN RESERVE UNIVERSITY · PI CHAK, AMITABH · 2001 to 2010
$1.6M
Methylated DNA Biomarkers for Barrett's Esophagus and Esophageal AdenocarcinomaK08DK080630 · NIDDK · FRED HUTCHINSON CANCER RESEARCH CENTER · PI KAZ, ANDREW M · 2007 to 2011
$673k
Insulin/IGF-1 Pathway in Barrett's EsophagusR21CA135692 · NCI · CASE WESTERN RESERVE UNIVERSITY · PI CHAK, AMITABH · 2008 to 2009
$420k
NCI NIH HHS K12 CA076917NCI NIH HHS P30 CA015704NCI NIH HHS R21 5R21CA135692NCI NIH HHS R21 CA135692NCI NIH HHS U01 CA152756NCI NIH HHS U01CA152756NCI NIH HHS U54CA143682NCI NIH HHS U54 CA143862NCI NIH HHS U54 CA163060NCI NIH HHS U54CA163060NIDDK NIH HHS 5K08DK080630NIDDK NIH HHS K08 DK080630NIDDK NIH HHS K24 DK002800NIDDK NIH HHS K24DK002800
6 · The paper itself

Abstract

The aberrant DNA methylation of tumor suppressor genes occurs frequently in Barrett's esophagus (BE) and esophageal adenocarcinoma (EAC) and likely affects the initiation and progression of BE to EAC. In the present study, we discovered PKP1 as a novel methylated gene in EAC and then investigated the role of loss of PKP1, a constituent of the desmosome complex found in stratified epithelial layers, on the behavior of Barrett's esophagus and esophageal adenocarcinoma cells. By using primary esophageal tissue samples we determined that PKP1 was rarely methylated in normal squamous esophagus (5/55; 9.1%) and BE (5/39; 12.8%) and more frequently methylated in Barrett's esophagus with high-grade dysplasia (HGD) or EAC (20/60; 33.3%; P < 0.05). Furthermore, PKP1 levels were decreased in BE and HGD/EAC cases compared to normal squamous esophagus cases. Knockdown of PKP1 in the BE cell lines CP-A and CP-D (both normally express PKP1) resulted in increased cell motility. Thus, PKP1 loss secondary to promoter methylation, as well as other mechanisms, may promote the progression of BE to EAC in a subset of patients via decreased desmosome assembly and increased cell motility.

Indexed as

DNA MethylationAdenocarcinomaBarrett EsophagusBiomarkers, TumorCell MovementDesmosomesDisease ProgressionEsophageal NeoplasmsHumansPlakophilinsPromoter Regions, GeneticRNA InterferenceRNA, MessengerRNA, Small InterferingTumor Cells, CulturedBiomarkers, TumorPKP1 protein, humanPlakophilinsRNA, MessengerRNA, Small Interfering

Identifiers

PMID22170739
PMCPMC3292431
OpenAlexW2087767192

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.