ArticleBMC plant biology2011
Genome-wide transcriptome analysis of gametophyte development in Physcomitrella patens.
Article in BMC plant biology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.
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Who cites it
18 citing papers in PubMed, 39 citations in OpenAlex.
- Tubulin post-translational modifications are conserved during land plant evolution.BMC plant biology · 2026Article
- Tailoring confocal microscopy for real-time analysis of photosynthesis at single-cell resolution.Cell reports methods · 2023Article
- Autophagy modulates growth and development in the mossFrontiers in plant science · 2022Article
- The nuclear GUCT domain-containing DEAD-box RNA helicases govern gametophytic and sporophytic development in Physcomitrium patens.Plant molecular biology · 2021Article
- Proteomic Analysis of Generative and Vegetative Nuclei Reveals Molecular Characteristics of Pollen Cell Differentiation inFrontiers in plant science · 2021Article
- Evolutionary insights into FYVE and PHOX effector proteins from the moss Physcomitrella patens.Planta · 2020Article
- The single berberine bridge enzyme homolog of Physcomitrella patens is a cellobiose oxidase.The FEBS journal · 2018Article
- Alternative splicing shapes transcriptome but not proteome diversity in Physcomitrella patens.Scientific reports · 2017Article
- The DEK1 Calpain Linker Functions in Three-Dimensional Body Patterning in Physcomitrella patens.Plant physiology · 2016Article
- Transcriptomes of Plant Gametophytes Have a Higher Proportion of Rapidly Evolving and Young Genes than Sporophytes.Molecular biology and evolution · 2016Article
- New features of desiccation tolerance in the lichen photobiont Trebouxia gelatinosa are revealed by a transcriptomic approach.Plant molecular biology · 2016Article
- Transcriptomic Analysis of Flower Blooming in Jasminum sambac through De Novo RNA Sequencing.Molecules (Basel, Switzerland) · 2015Article
- Specific pools of endogenous peptides are present in gametophore, protonema, and protoplast cells of the moss Physcomitrella patens.BMC plant biology · 2015Article
- De novo assembly and characterization of the transcriptome in the desiccation-tolerant moss Syntrichia caninervis.BMC research notes · 2014Article
- Genome-wide expression profiles of seasonal bud dormancy at four critical stages in Japanese apricot.Plant molecular biology · 2013Article
- Next-generation sequencing-based transcriptome profiling analysis of Pohlia nutans reveals insight into the stress-relevant genes in Antarctic moss.Extremophiles : life under extreme conditions · 2013Article
- A contribution to the study of plant development evolution based on gene co-expression networks.Frontiers in plant science · 2013Article
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Corrections and comments
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Authors and funding
5 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundRegulation of gene expression plays a pivotal role in controlling the development of multicellular plants. To explore the molecular mechanism of plant developmental-stage transition and cell-fate determination, a genome-wide analysis was undertaken of sequential developmental time-points and individual tissue types in the model moss Physcomitrella patens because of the short life cycle and relative structural simplicity of this plant.
resultsGene expression was analyzed by digital gene expression tag profiling of samples taken from P. patens protonema at 3, 14 and 24 days, and from leafy shoot tissues at 30 days, after protoplast isolation, and from 14-day-old caulonemal and chloronemal tissues. In total, 4333 genes were identified as differentially displayed. Among these genes, 4129 were developmental-stage specific and 423 were preferentially expressed in either chloronemal or caulonemal tissues. Most of the differentially displayed genes were assigned to functions in organic substance and energy metabolism or macromolecule biosynthetic and catabolic processes based on gene ontology descriptions. In addition, some regulatory genes identified as candidates might be involved in controlling the developmental-stage transition and cell differentiation, namely MYB-like, HB-8, AL3, zinc finger family proteins, bHLH superfamily, GATA superfamily, GATA and bZIP transcription factors, protein kinases, genes related to protein/amino acid methylation, and auxin, ethylene, and cytokinin signaling pathways.
conclusionsThese genes that show highly dynamic changes in expression during development in P. patens are potential targets for further functional characterization and evolutionary developmental biology studies.
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