Evidence map›Paper›PMID 22167189›Full record

ArticleThe Journal of biological chemistry2012

REF4 and RFR1, subunits of the transcriptional coregulatory complex mediator, are required for phenylpropanoid homeostasis in Arabidopsis.

Nicholas D Bonawitz, Whitney L Soltau, Michael R Blatchley, Brendan L Powers, Anna K Hurlock, Leslie A Seals, Jing-Ke Weng, Jake Stout, Clint Chapple

Abstract read
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Article in The Journal of biological chemistry, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 48 papers.

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0cells of the map it votes in
48citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

48 citing papers in PubMed.

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  11. GIpred: a computational tool for prediction of GIGANTEA proteins using machine learning algorithm.Physiology and molecular biology of plants : an international journal of functional plant biology · 2022
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  13. Review
  14. Towards a Cardoon (International journal of molecular sciences · 2021
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  19. Syringic Acid Alleviates Cesium-Induced Growth Defect inInternational journal of molecular sciences · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Nicholas D BonawitzDepartment of Biochemistry, Purdue University, West Lafayette, Indiana 47907-2063, USA.
Whitney L Soltau
Michael R Blatchley
Brendan L Powers
Anna K Hurlock
Leslie A Seals
Jing-Ke Weng
Jake Stout
Clint Chapple

Funding

Howard Hughes Medical Institute
6 · The paper itself

Abstract

The plant phenylpropanoid pathway produces an array of metabolites that impact human health and the utility of feed and fiber crops. We previously characterized several Arabidopsis thaliana mutants with dominant mutations in REDUCED EPIDERMAL FLUORESCENCE 4 (REF4) that cause dwarfing and decreased accumulation of phenylpropanoids. In contrast, ref4 null plants are of normal stature and have no apparent defect in phenylpropanoid biosynthesis. Here we show that disruption of both REF4 and its paralog, REF4-RELATED 1 (RFR1), results in enhanced expression of multiple phenylpropanoid biosynthetic genes, as well as increased accumulation of numerous downstream products. We also show that the dominant ref4-3 mutant protein interferes with the ability of the PAP1/MYB75 transcription factor to induce the expression of PAL1 and drive anthocyanin accumulation. Consistent with our experimental results, both REF4 and RFR1 have been shown to physically associate with the conserved transcriptional coregulatory complex, Mediator, which transduces information from cis-acting DNA elements to RNA polymerase II at the core promoter. Taken together, our data provide critical genetic support for a functional role of REF4 and RFR1 in the Mediator complex, and for Mediator in the maintenance of phenylpropanoid homeostasis. Finally, we show that wild-type RFR1 substantially mitigates the phenotype of the dominant ref4-3 mutant, suggesting that REF4 and RFR1 may compete with one another for common binding partners or for occupancy in Mediator. Determining the functions of diverse Mediator subunits is essential to understand eukaryotic gene regulation, and to facilitate rational manipulation of plant metabolic pathways to better suit human needs.

Indexed as

Gene Expression Regulation, PlantTranscription, GeneticArabidopsisArabidopsis ProteinsHomeostasisMembrane ProteinsMutationOrganic ChemicalsPancreatitis-Associated ProteinsPhenotypePhylogenyProtein SubunitsRNA, MessengerSequence Homology, Amino AcidArabidopsis ProteinsMembrane ProteinsOrganic ChemicalsPancreatitis-Associated ProteinsProtein SubunitsREF4 protein, ArabidopsisREG3A protein, humanRNA, Messenger

Identifiers

PMID22167189
PMCPMC3285322

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.