ArticlePloS one2011
Species discrimination, population structure and linkage disequilibrium in Eucalyptus camaldulensis and Eucalyptus tereticornis using SSR markers.
Article in PloS one, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.
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Who cites it
15 citing papers in PubMed.
- De novo SSR markers development and genetic diversity assessment inPhysiology and molecular biology of plants : an international journal of functional plant biology · 2025Article
- Population structure and genetic diversity inFrontiers in plant science · 2023Article
- Chromosome-specific polymorphic SSR markers in tropical eucalypt species using low coverage whole genome sequences: systematic characterization and validation.Genomics & informatics · 2021Article
- Genome skimming-based simple sequence repeat (SSR) marker discovery and characterization inPhysiology and molecular biology of plants : an international journal of functional plant biology · 2021Article
- The draft nuclear genome assembly of Eucalyptus pauciflora: a pipeline for comparing de novo assemblies.GigaScience · 2020Article
- Genome wide association study of 5 agronomic traits in olive (Olea europaea L.).Scientific reports · 2019Article
- Thirteen years under arid conditions: exploring marker-trait associations inBreeding science · 2018Article
- Quantitative trait loci mapping for stomatal traits in interspecific hybrids of Eucalyptus.Journal of genetics · 2018Article
- The first identification of genomic loci in plants associated with resistance to galling insects: a case study in Eucalyptus L'Hér. (Myrtaceae).Scientific reports · 2018Article
- Development of genetic markers in Eucalyptus species by target enrichment and exome sequencing.PloS one · 2015Article
- Microsatellite resources of Eucalyptus: current status and future perspectives.Botanical studies · 2014Review
- Linkage disequilibrium and population-structure analysis among Capsicum annuum L. cultivars for use in association mapping.Molecular genetics and genomics : MGG · 2014Article
- Promoting utilization of Saccharum spp. genetic resources through genetic diversity analysis and core collection construction.PloS one · 2014Article
- Article
- Gene-based single nucleotide polymorphism markers for genetic and association mapping in common bean.BMC genetics · 2012Article
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4 authors.
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Abstract
Eucalyptus camaldulensis and E. tereticornis are closely related species commonly cultivated for pulp wood in many tropical countries including India. Understanding the genetic structure and linkage disequilibrium (LD) existing in these species is essential for the improvement of industrially important traits. Our goal was to evaluate the use of simple sequence repeat (SSR) loci for species discrimination, population structure and LD analysis in these species. Investigations were carried out with the most common alleles in 93 accessions belonging to these two species using 62 SSR markers through cross amplification. The polymorphic information content (PIC) ranged from 0.44 to 0.93 and 0.36 to 0.93 in E. camaldulensis and E. tereticornis respectively. A clear delineation between the two species was evident based on the analysis of population structure and species-specific alleles. Significant genotypic LD was found in E. camaldulensis, wherein out of 135 significant pairs, 17 pairs showed r(2)≥0.1. Similarly, in E. tereticornis, out of 136 significant pairs, 18 pairs showed r(2)≥0.1. The extent of LD decayed rapidly showing the significance of association analyses in eucalypts with higher resolution markers. The availability of whole genome sequence for E. grandis and the synteny and co-linearity in the genome of eucalypts, will allow genome-wide genotyping using microsatellites or single nucleotide polymorphims.
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