ArticlePloS one2011
A high density consensus map of rye (Secale cereale L.) based on DArT markers.
Article in PloS one, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers.
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Who cites it
44 citing papers in PubMed.
- Simulation of functional additive and non-additive genetic effects using statistical estimates from quantitative genetic models.Heredity · 2024Article
- Identification of quantitative trait loci associated with leaf rust resistance in rye by precision mapping.BMC plant biology · 2024Article
- Genetic diversity of a Silybum marianum (L.) Gaertn. germplasm collection revealed by DNA Diversity Array Technology (DArTseq).PloS one · 2024Article
- In search of the relationship between the rye polyamine oxidase (PAO) gene and resistance to powdery mildew (PM).Journal of applied genetics · 2023Article
- Genetic mapping of adult-plant resistance genes to powdery mildew in triticale.Journal of applied genetics · 2022Article
- Molecular Cytogenetic Identification of a New Wheat-Rye 6R Addition Line and Physical Localization of Its Powdery Mildew Resistance Gene.Frontiers in plant science · 2022Article
- A mechanistic view on lodging resistance in rye and wheat: a multiscale comparative study.Plant biotechnology journal · 2021Article
- New PCR-specific markers for pollen fertility restoration QRfp-4R in rye (Secale cereale L.) with Pampa sterilizing cytoplasm.Journal of applied genetics · 2021Article
- Genetic mapping of pollen fertility restoration QTLs in rye (Secale cereale L.) with CMS Pampa.Journal of applied genetics · 2021Article
- Genetic mapping of male sterility and pollen fertility QTLs in triticale with sterilizing Triticum timopheevii cytoplasm.Journal of applied genetics · 2021Article
- Next Generation Sequencing Based Forward Genetic Approaches for Identification and Mapping of Causal Mutations in Crop Plants: A Comprehensive Review.Plants (Basel, Switzerland) · 2020Review
- How Machine Learning Methods Helped Find Putative Rye Wax Genes Among GBS Data.International journal of molecular sciences · 2020Article
- The GAMYB gene in rye: sequence, polymorphisms, map location, allele-specific markers, and relationship with α-amylase activity.BMC genomics · 2020Article
- Identification and mapping of a new recessive dwarfing gene dw9 on the 6RL rye chromosome and its phenotypic effects.PloS one · 2020Article
- Assessing the genetic diversity and characterizing genomic regions conferring Tan Spot resistance in cultivated rye.PloS one · 2019Article
- Putative candidate genes responsible for leaf rolling in rye (Secale cereale L.).BMC genetics · 2018Article
- Effective BAC clone anchoring with genotyping-by-sequencing and Diversity Arrays Technology in a large genome cereal rye.Scientific reports · 2018Article
- Identification of a novel, dominant dwarfing gene (Ddw4) and its effect on morphological traits of rye.PloS one · 2018Article
- A consensus linkage map of lentil based on DArT markers from three RIL mapping populations.PloS one · 2018Article
- QTL mapping and comparative genome analysis of agronomic traits including grain yield in winter rye.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2017Article
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Authors and funding
10 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundRye (Secale cereale L.) is an economically important crop, exhibiting unique features such as outstanding resistance to biotic and abiotic stresses and high nutrient use efficiency. This species presents a challenge to geneticists and breeders due to its large genome containing a high proportion of repetitive sequences, self incompatibility, severe inbreeding depression and tissue culture recalcitrance. The genomic resources currently available for rye are underdeveloped in comparison with other crops of similar economic importance. The aim of this study was to create a highly saturated, multilocus linkage map of rye via consensus mapping, based on Diversity Arrays Technology (DArT) markers. METHODOLOGY/PRINCIPAL
findingsRecombinant inbred lines (RILs) from 5 populations (564 in total) were genotyped using DArT markers and subjected to linkage analysis using Join Map 4.0 and Multipoint Consensus 2.2 software. A consensus map was constructed using a total of 9703 segregating markers. The average chromosome map length ranged from 199.9 cM (2R) to 251.4 cM (4R) and the average map density was 1.1 cM. The integrated map comprised 4048 loci with the number of markers per chromosome ranging from 454 for 7R to 805 for 4R. In comparison with previously published studies on rye, this represents an eight-fold increase in the number of loci placed on a consensus map and a more than two-fold increase in the number of genetically mapped DArT markers. CONCLUSIONS/SIGNIFICANCE: Through the careful choice of marker type, mapping populations and the use of software packages implementing powerful algorithms for map order optimization, we produced a valuable resource for rye and triticale genomics and breeding, which provides an excellent starting point for more in-depth studies on rye genome organization.
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