Evidence map›Paper›PMID 22160714›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2012

Structural basis for gating charge movement in the voltage sensor of a sodium channel.

Vladimir Yarov-Yarovoy, Paul G DeCaen, Ruth E Westenbroek, Chien-Yuan Pan, Todd Scheuer, David Baker, William A Catterall

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 179 papers.

0numbers the graph read from it
0cells of the map it votes in
179citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

179 citing papers in PubMed.

  1. Voltage-sensing domains: structural and functional diversity.European biophysics journal : EBJ · 2026
    Review
  2. Article
  3. Article
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  6. HInternational journal of molecular sciences · 2025
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  8. Article
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  10. Article
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  12. Article
  13. Atomistic mechanisms of the regulation of small-conductance CaProceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  14. Article
  15. Review
  16. Bioelectricity in dental medicine: a narrative review.Biomedical engineering online · 2024
    Review
  17. Article
  18. Review
  19. Article
  20. Article

119 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Vladimir Yarov-YarovoyDepartment of Pharmacology, University of Washington, Seattle, WA 98195, USA.
Paul G DeCaen
Ruth E Westenbroek
Chien-Yuan Pan
Todd Scheuer
David Baker
William A Catterall

Funding

VOLTAGE-SENSITIVE SODIUM CHANNELS IN BRAINR01NS015751 · NINDS · UNIVERSITY OF WASHINGTON · PI CATTERALL, WILLIAM A · 1985 to 2018
$6.0M
New Methods for High-Resolution Comparative ModelingP20GM076222 · NIGMS · RESEARCH INST OF FOX CHASE CAN CTR · PI DUNBRACK, ROLAND L · 2006 to 2009
$3.3M
Howard Hughes Medical InstituteNIGMS NIH HHS P20 GM076222NIGMS NIH HHS P20GM076222NINDS NIH HHS R01 NS015751NINDS NIH HHS R01NS015751
6 · The paper itself

Abstract

Voltage-dependent gating of ion channels is essential for electrical signaling in excitable cells, but the structural basis for voltage sensor function is unknown. We constructed high-resolution structural models of resting, intermediate, and activated states of the voltage-sensing domain of the bacterial sodium channel NaChBac using the Rosetta modeling method, crystal structures of related channels, and experimental data showing state-dependent interactions between the gating charge-carrying arginines in the S4 segment and negatively charged residues in neighboring transmembrane segments. The resulting structural models illustrate a network of ionic and hydrogen-bonding interactions that are made sequentially by the gating charges as they move out under the influence of the electric field. The S4 segment slides 6-8 Å outward through a narrow groove formed by the S1, S2, and S3 segments, rotates ∼30°, and tilts sideways at a pivot point formed by a highly conserved hydrophobic region near the middle of the voltage sensor. The S4 segment has a 3(10)-helical conformation in the narrow inner gating pore, which allows linear movement of the gating charges across the inner one-half of the membrane. Conformational changes of the intracellular one-half of S4 during activation are rigidly coupled to lateral movement of the S4-S5 linker, which could induce movement of the S5 and S6 segments and open the intracellular gate of the pore. We confirmed the validity of these structural models by comparing with a high-resolution structure of a NaChBac homolog and showing predicted molecular interactions of hydrophobic residues in the S4 segment in disulfide-locking studies.

Indexed as

Models, MolecularProtein Structure, TertiaryAmino Acid SequenceArginineBacterial ProteinsBase SequenceCrystallographyElectromagnetic FieldsElectrophysiologyHydrogen BondingIon Channel GatingMolecular Sequence DataSequence AlignmentSodium ChannelsArginineBacterial ProteinsNaChBac protein, bacteriaSodium Channels

Identifiers

PMID22160714
PMCPMC3258622

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.