Evidence map›Paper›PMID 22160242›Full record

ArticleMammalian genome : official journal of the International Mammalian Genome Society2012

Scram1 is a modifier of spinal cord resistance for astrocytoma on mouse Chr 5.

Jessica Amlin-Van Schaick, Sungjin Kim, Karl W Broman, Karlyne M Reilly

Abstract read
In one paragraph

Article in Mammalian genome : official journal of the International Mammalian Genome Society, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.9field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 13 citations in OpenAlex.

  1. Contextual signaling in cancer.Seminars in cell & developmental biology · 2016
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 1 country.

Jessica Amlin-Van SchaickMouse Cancer Genetics Program, National Cancer Institute, West 7th St. at Fort Detrick, P.O. Box B, Frederick, MD 21702, USA.
Sungjin Kim
Karl W Broman
Karlyne M Reilly
University of Wisconsin–Madison · USGeorge Washington University · USNational Cancer Institute · US

Funding

Identification of Modifier Gene of Tumors Associated with NF1 and AstrocytomaZIABC010539 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI REILLY, KARLYNE M · 2009 to 2014
$4.1M
Statistical Methods and Software for QTL MappingR01GM074244 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI BROMAN, KARL W · 2005 to 2013
$2.3M
Intramural NIH HHS ZIA BC010539NCI NIH HHS N01 CO012400NCI NIH HHS N01-CO-12400NHGRI NIH HHS HHSN268200782096CNIGMS NIH HHS R01 GM074244
6 · The paper itself

Abstract

Tumor location can profoundly affect morbidity and patient prognosis, even for the same tumor type. Very little is known about whether tumor location is determined stochastically or whether genetic risk factors can affect where tumors arise within an organ system. We have taken advantage of the Nf1-/+;Trp53-/+cis mouse model of astrocytoma/glioblastoma to map genetic loci affecting whether astrocytomas are found in the spinal cord. We identify a locus on distal Chr 5, termed Scram1 for spinal cord resistance to astrocytoma modifier 1, with a LOD score of 5.0 and a genome-wide significance of P < 0.004. Mice heterozygous for C57BL/6J×129S4/SvJae at this locus show less astrocytoma in the spinal cord compared to 129S4/SvJae homozygous mice, although we have shown previously that 129S4/SvJae mice are more resistant to astrocytoma than C57BL/6J. Furthermore, the astrocytomas that are found in the spinal cord of Scram1 heterozygous mice arise in older mice. Because spinal cord astrocytomas are very rare and difficult to treat, a better understanding of the genetic factors that govern astrocytoma in the spine may lead to new targets of therapy or prevention.

Indexed as

Genes, ModifierAnimalsAstrocytomaChromosome MappingChromosomes, MammalianDisease Models, AnimalFemaleHumansMaleMiceMice, 129 StrainMice, Inbred C57BLSpinal Cord

Identifiers

PMID22160242
PMCPMC3299925
OpenAlexW1997603484

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.