ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2012
A mixed model QTL analysis for sugarcane multiple-harvest-location trial data.
Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
26 citing papers in PubMed, 86 citations in OpenAlex.
- Revisiting the Molecular Roadmap for Sugar Crops: Genome Reading, Trait Writing and Variety Redesigning.Plant biotechnology journal · 2026Review
- Genomic prediction and association analyses for breeding parthenocarpic blueberries.Horticulture research · 2025Article
- Understanding the genetic basis of blueberry postharvest traits to define better breeding strategies.G3 (Bethesda, Md.) · 2024Article
- Genetic analysis of mixed models of fruit sugar-acid fractions in a cross between jujube (Frontiers in plant science · 2023Article
- Validation of candidate gene-based EST-SSR markers for sugar yield in sugarcane.Frontiers in plant science · 2023Article
- Identification of potential MTAs and candidate genes for juice quality- and yield-related traits in Saccharum clones: a genome-wide association and comparative genomic study.Molecular genetics and genomics : MGG · 2022Article
- Leveraging probability concepts for cultivar recommendation in multi-environment trials.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2022Article
- Applying Molecular Phenotyping Tools to Explore Sugarcane Carbon Potential.Frontiers in plant science · 2021Review
- Development of an Axiom Sugarcane100K SNP array for genetic map construction and QTL identification.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2019Article
- Accurate genomic prediction of Coffea canephora in multiple environments using whole-genome statistical models.Heredity · 2019Article
- A genome-wide association study identified loci for yield component traits in sugarcane (Saccharum spp.).PloS one · 2019Article
- QTL detection for growth and latex production in a full-sib rubber tree population cultivated under suboptimal climate conditions.BMC plant biology · 2018Article
- Genome-Wide Association and Regional Heritability Mapping of Plant Architecture, Lodging and Productivity inG3 (Bethesda, Md.) · 2018Article
- Dissecting Key Adaptation Traits in the Polyploid PerennialFrontiers in plant science · 2018Article
- Development and Applications of a High Throughput Genotyping Tool for Polyploid Crops: Single Nucleotide Polymorphism (SNP) Array.Frontiers in plant science · 2018Review
- GBS-based single dosage markers for linkage and QTL mapping allow gene mining for yield-related traits in sugarcane.BMC genomics · 2017Article
- Identification of putative candidate genes for red rot resistance in sugarcane (Saccharum species hybrid) using LD-based association mapping.Molecular genetics and genomics : MGG · 2016Article
- Evidence of Allopolyploidy in Urochloa humidicola Based on Cytological Analysis and Genetic Linkage Mapping.PloS one · 2016Article
- MicroRNAs and drought responses in sugarcane.Frontiers in plant science · 2015Review
- Identification of quantitative trait loci and a candidate locus for freezing tolerance in controlled and outdoor environments in the overwintering crucifer Boechera stricta.Plant, cell & environment · 2014Article
Corrections and comments
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Authors and funding
10 authors at 4 institutions in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Sugarcane-breeding programs take at least 12 years to develop new commercial cultivars. Molecular markers offer a possibility to study the genetic architecture of quantitative traits in sugarcane, and they may be used in marker-assisted selection to speed up artificial selection. Although the performance of sugarcane progenies in breeding programs are commonly evaluated across a range of locations and harvest years, many of the QTL detection methods ignore two- and three-way interactions between QTL, harvest, and location. In this work, a strategy for QTL detection in multi-harvest-location trial data, based on interval mapping and mixed models, is proposed and applied to map QTL effects on a segregating progeny from a biparental cross of pre-commercial Brazilian cultivars, evaluated at two locations and three consecutive harvest years for cane yield (tonnes per hectare), sugar yield (tonnes per hectare), fiber percent, and sucrose content. In the mixed model, we have included appropriate (co)variance structures for modeling heterogeneity and correlation of genetic effects and non-genetic residual effects. Forty-six QTLs were found: 13 QTLs for cane yield, 14 for sugar yield, 11 for fiber percent, and 8 for sucrose content. In addition, QTL by harvest, QTL by location, and QTL by harvest by location interaction effects were significant for all evaluated traits (30 QTLs showed some interaction, and 16 none). Our results contribute to a better understanding of the genetic architecture of complex traits related to biomass production and sucrose content in sugarcane.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.