Evidence map›Paper›PMID 22159605›Full record

ArticleApplied microbiology and biotechnology2012

The complete genome sequence of Pantoea ananatis AJ13355, an organism with great biotechnological potential.

Yoshihiko Hara, Naoki Kadotani, Hiroshi Izui, Joanna I Katashkina, Tatiana M Kuvaeva, Irina G Andreeva, Lyubov I Golubeva, Dmitry B Malko, Vsevolod J Makeev, Sergey V Mashko and 1 more

Open access · hybridAbstract read
In one paragraph

Article in Applied microbiology and biotechnology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
1.5field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 63 citations in OpenAlex.

  1. Comparative genomics-based insights intoApplied and environmental microbiology · 2025
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  2. International journal of systematic and evolutionary microbiology · 2025
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  5. Transcriptional Profiling and Transposon Mutagenesis Study of the EndophyteInternational journal of molecular sciences · 2023
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  9. Microbial Production Potential ofMicroorganisms · 2022
    Review
  10. TheMicroorganisms · 2022
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  11. Article
  12. Monoterpenoid biosynthesis by engineered microbes.Journal of industrial microbiology & biotechnology · 2021
    Review
  13. Article
  14. Pathogens (Basel, Switzerland) · 2020
    Article
  15. Article
  16. Article
  17. Metabolic Engineering ofFrontiers in microbiology · 2019
    Article
  18. Article
  19. Article
  20. Fermentative Production of Cysteine by Pantoea ananatis.Applied and environmental microbiology · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 3 countries.

Yoshihiko HaraFermentation and Biotechnology Laboratories, Ajinomoto Co., Inc., Kawasaki-ku, Kawasaki, Japan.
Naoki Kadotani
Hiroshi Izui
Joanna I Katashkina
Tatiana M Kuvaeva
Irina G Andreeva
Lyubov I Golubeva
Dmitry B Malko
Vsevolod J Makeev
Sergey V Mashko
Yurii I Kozlov
Ajinomoto (Russia) · RUGenetika · RUAjinomoto (Japan) · JPAjinomoto (United States) · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Pantoea ananatis AJ13355 is a newly identified member of the Enterobacteriaceae family with promising biotechnological applications. This bacterium is able to grow at an acidic pH and is resistant to saturating concentrations of L-glutamic acid, making this organism a suitable host for the production of L-glutamate. In the current study, the complete genomic sequence of P. ananatis AJ13355 was determined. The genome was found to consist of a single circular chromosome consisting of 4,555,536 bp [DDBJ: AP012032] and a circular plasmid, pEA320, of 321,744 bp [DDBJ: AP012033]. After automated annotation, 4,071 protein-coding sequences were identified in the P. ananatis AJ13355 genome. For 4,025 of these genes, functions were assigned based on homologies to known proteins. A high level of nucleotide sequence identity (99%) was revealed between the genome of P. ananatis AJ13355 and the previously published genome of P. ananatis LMG 20103. Short colinear regions, which are identical to DNA sequences in the Escherichia coli MG1655 chromosome, were found to be widely dispersed along the P. ananatis AJ13355 genome. Conjugal gene transfer from E. coli to P. ananatis, mediated by homologous recombination between short identical sequences, was also experimentally demonstrated. The determination of the genome sequence has paved the way for the directed metabolic engineering of P. ananatis to produce biotechnologically relevant compounds.

Indexed as

Genome, BacterialChromosomes, BacterialConjugation, GeneticDNA, BacterialDNA, CircularEscherichia coliGene Transfer, HorizontalMolecular Sequence DataPantoeaPlasmidsRecombination, GeneticSequence Analysis, DNASequence Homology, Nucleic AcidDNA, BacterialDNA, Circular

Identifiers

PMID22159605
PMCPMC3251776
OpenAlexW2076296464

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.