Evidence map›Paper›PMID 22158714›Full record

ArticleEukaryotic cell2012

Resolving phenylalanine metabolism sheds light on natural synthesis of penicillin G in Penicillium chrysogenum.

Tânia Veiga, Daniel Solis-Escalante, Gabriele Romagnoli, Angela ten Pierick, Mark Hanemaaijer, Amit T Deshmukh, Amit Deshmuhk, Aljoscha Wahl, Jack T Pronk, Jean-Marc Daran

Erratum issuedOpen access · diamondAbstract read
In one paragraph

Article in Eukaryotic cell, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.9field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 27 citations in OpenAlex.

  1. Article
  2. Microorganisms · 2022
    Review
  3. Article
  4. Review
  5. Impact of Classical Strain Improvement ofApplied and environmental microbiology · 2020
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
4 · The record

Corrections and comments

  • Erratum issued
    Deshmuhk, Amit [corrected to Deshmukh, Amit T]
5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Tânia VeigaIndustrial Microbiology Section, Department of Biotechnology, Delft University of Technology, Julianalaan 67, Delft, The Netherlands.
Daniel Solis-Escalante
Gabriele Romagnoli
Angela ten Pierick
Mark Hanemaaijer
Amit T Deshmukh
Amit Deshmuhk
Aljoscha Wahl
Jack T Pronk
Jean-Marc Daran
Cancer Genomics Centre · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The industrial production of penicillin G by Penicillium chrysogenum requires the supplementation of the growth medium with the side chain precursor phenylacetate. The growth of P. chrysogenum with phenylalanine as the sole nitrogen source resulted in the extracellular production of phenylacetate and penicillin G. To analyze this natural pathway for penicillin G production, chemostat cultures were switched to [U-(13)C]phenylalanine as the nitrogen source. The quantification and modeling of the dynamics of labeled metabolites indicated that phenylalanine was (i) incorporated in nascent protein, (ii) transaminated to phenylpyruvate and further converted by oxidation or by decarboxylation, and (iii) hydroxylated to tyrosine and subsequently metabolized via the homogentisate pathway. The involvement of the homogentisate pathway was supported by the comparative transcriptome analysis of P. chrysogenum cultures grown with phenylalanine and with (NH(4))(2)SO(4) as the nitrogen source. This transcriptome analysis also enabled the identification of two putative 2-oxo acid decarboxylase genes (Pc13g9300 and Pc18g01490). cDNAs of both genes were cloned and expressed in the 2-oxo-acid-decarboxylase-free Saccharomyces cerevisiae strain CEN.PK711-7C (pdc1 pdc5 pdc6Δ aro10Δ thi3Δ). The introduction of Pc13g09300 restored the growth of this S. cerevisiae mutant on glucose and phenylalanine, thereby demonstrating that Pc13g09300 encodes a dual-substrate pyruvate and phenylpyruvate decarboxylase, which plays a key role in an Ehrlich-type pathway for the production of phenylacetate in P. chrysogenum. These results provide a basis for the metabolic engineering of P. chrysogenum for the production of the penicillin G side chain precursor phenylacetate.

Indexed as

Carboxy-LyasesDecarboxylationMetabolic EngineeringPenicillin GPenicillium chrysogenumPhenylacetatesPhenylalaninePhenylpyruvic AcidsSaccharomyces cerevisiaeTranscriptomeCarboxy-LyasesPenicillin GPhenylacetatesPhenylalaninephenylpyruvic acidPhenylpyruvic Acids

Identifiers

PMID22158714
PMCPMC3272894
OpenAlexW2103606068

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.