Evidence map›Paper›PMID 22158538›Full record

ArticleNature genetics2011

Recurrent mutations in the U2AF1 splicing factor in myelodysplastic syndromes.

Timothy A Graubert, Dong Shen, Li Ding, Theresa Okeyo-Owuor, Cara L Lunn, Jin Shao, Kilannin Krysiak, Christopher C Harris, Daniel C Koboldt, David E Larson and 20 more

Open access · greenAbstract read
In one paragraph

Article in Nature genetics, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 378 papers, 4 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
378citing papers in PubMed, 4 pooled it
19.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

378 citing papers in PubMed, 4 syntheses or guidelines pooled it, 581 citations in OpenAlex.

  1. Guideline
  2. Pooled it
  3. Prognostic significance ofThe Journal of international medical research · 2020
    Pooled it
  4. Pooled it
  5. Trial
  6. Trial
  7. Trial
  8. TargetingGenes & development · 2026
    Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Review
  15. Molecular and therapeutic frontiers in anemia therapy.The Journal of clinical investigation · 2026
    Review
  16. Article
  17. Review
  18. RNA Splicing as a Therapeutic Target in Cancer.Annual review of pharmacology and toxicology · 2026
    Review
  19. Article
  20. Article

318 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

30 authors at 2 institutions in 2 countries.

Timothy A GraubertDepartment of Internal Medicine, Division of Oncology, Washington University, St. Louis, Missouri, USA.
Dong Shen
Li Ding
Theresa Okeyo-Owuor
Cara L Lunn
Jin Shao
Kilannin Krysiak
Christopher C Harris
Daniel C Koboldt
David E Larson
Michael D McLellan
David J Dooling
Rachel M Abbott
Robert S Fulton
Heather Schmidt
Joelle Kalicki-Veizer
Michelle O'Laughlin
Marcus Grillot
Jack Baty
Sharon Heath
John L Frater
Talat Nasim
Daniel C Link
Michael H Tomasson
Peter Westervelt
John F DiPersio
Elaine R Mardis
Timothy J Ley
Richard K Wilson
Matthew J Walter
Washington University in St. Louis · USKing's College Hospital · GB

Funding

Large Scale Genome SequencingU54HG003079 · NHGRI · WASHINGTON UNIVERSITY · PI DUTCHER, SUSAN K · 2004 to 2016
$445.7M
Washington University Center for Cellular ImagingP30CA091842 · NCI · WASHINGTON UNIVERSITY · PI TIMOTHY J. EBERLEIN · 2001 to 2026
$128.0M
Specimen Acquistition and Expression ProfilingP01CA101937 · NCI · WASHINGTON UNIVERSITY · PI LEY, TIMOTHY J. · 2003 to 2023
$58.8M
WHOLE GENOME SEQUENCING OF MYELODYSPLASTIC SYNDROMESRC2HL102927 · NHLBI · WASHINGTON UNIVERSITY · PI GRAUBERT, TIMOTHY A · 2009 to 2010
$2.5M
Genomics of myelodysplastic syndromesR01HL082973 · NHLBI · WASHINGTON UNIVERSITY · PI GRAUBERT, TIMOTHY A · 2005 to 2008
$2.1M
Howard Hughes Medical InstituteNCI NIH HHS P01 CA101937NCI NIH HHS P01CA101937NCI NIH HHS P30 CA091842NHGRI NIH HHS U54 HG003079NHGRI NIH HHS U54HG003079NHLBI NIH HHS R01 HL082973NHLBI NIH HHS R01HL082973NHLBI NIH HHS RC2 HL102927NHLBI NIH HHS RC2HL102927
6 · The paper itself

Abstract

Myelodysplastic syndromes (MDS) are hematopoietic stem cell disorders that often progress to chemotherapy-resistant secondary acute myeloid leukemia (sAML). We used whole-genome sequencing to perform an unbiased comprehensive screen to discover the somatic mutations in a sample from an individual with sAML and genotyped the loci containing these mutations in the matched MDS sample. Here we show that a missense mutation affecting the serine at codon 34 (Ser34) in U2AF1 was recurrently present in 13 out of 150 (8.7%) subjects with de novo MDS, and we found suggestive evidence of an increased risk of progression to sAML associated with this mutation. U2AF1 is a U2 auxiliary factor protein that recognizes the AG splice acceptor dinucleotide at the 3' end of introns, and the alterations in U2AF1 are located in highly conserved zinc fingers of this protein. Mutant U2AF1 promotes enhanced splicing and exon skipping in reporter assays in vitro. This previously unidentified, recurrent mutation in U2AF1 implicates altered pre-mRNA splicing as a potential mechanism for MDS pathogenesis.

Indexed as

Mutation, MissenseAdultAgedAged, 80 and overBase SequenceDisease ProgressionFemaleHumansMaleMiddle AgedMolecular Sequence DataMyelodysplastic SyndromesNuclear ProteinsRibonucleoproteinsRNA SplicingSplicing Factor U2AFNuclear ProteinsRibonucleoproteinsSplicing Factor U2AFU2AF1 protein, human

Identifiers

PMID22158538
PMCPMC3247063
OpenAlexW2091242855

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.