Evidence map›Paper›PMID 22157959›Full record

ArticleNature structural & molecular biology2011

Structural basis of pre-let-7 miRNA recognition by the zinc knuckles of pluripotency factor Lin28.

Fionna E Loughlin, Luca F R Gebert, Harry Towbin, Andreas Brunschweiger, Jonathan Hall, Frédéric H-T Allain

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Article in Nature structural & molecular biology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 78 papers.

0numbers the graph read from it
0cells of the map it votes in
78citing papers in PubMed
4.0field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

78 citing papers in PubMed, 129 citations in OpenAlex.

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  17. Therapeutic targeting of RNA-binding protein by RNA-PROTAC.Molecular therapy : the journal of the American Society of Gene Therapy · 2021
    Article
  18. Article
  19. Article
  20. RNA-PROTACs: Degraders of RNA-Binding Proteins.Angewandte Chemie (International ed. in English) · 2021
    Article

18 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Fionna E LoughlinInstitute of Molecular Biology and Biophysics, ETH Zürich, Zürich, Switzerland.
Luca F R Gebert
Harry Towbin
Andreas Brunschweiger
Jonathan Hall
Frédéric H-T Allain
ETH Zurich · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Lin28 inhibits the biogenesis of let-7 miRNAs through a direct interaction with the terminal loop of pre-let-7. This interaction requires the zinc-knuckle domains of Lin28. We show that the zinc knuckle domains of Lin28 are sufficient to provide binding selectivity for pre-let-7 miRNAs and present the NMR structure of human Lin28 zinc knuckles bound to the short sequence 5'-AGGAGAU-3'. The structure reveals that each zinc knuckle recognizes an AG dinucleotide separated by a single nucleotide spacer. This defines a new 5'-NGNNG-3' consensus motif that explains how Lin28 selectively recognizes pre-let-7 family members. Binding assays in cell lysates and functional assays in cultured cells demonstrate that the interactions observed in the solution structure also occur between the full-length protein and members of the pre-let-7 family. The consensus sequence explains several seemingly disparate previously published observations on the binding properties of Lin28.

Indexed as

Nucleic Acid ConformationProtein Structure, TertiaryBase SequenceBinding, CompetitiveBinding SitesCalorimetryCell Line, TumorHeLa CellsHumansMagnetic Resonance SpectroscopyMicroRNAsModels, MolecularMolecular Sequence DataMutationNucleotide MotifsOligoribonucleotidesLin28A protein, humanMicroRNAsmirnlet7 microRNA, humanOligoribonucleotidesRNA-Binding Proteins

Identifiers

PMID22157959
OpenAlexW2041865329

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.