Evidence map›Paper›PMID 22157821›Full record

ArticleThe EMBO journal2012

VprBP binds full-length RAG1 and is required for B-cell development and V(D)J recombination fidelity.

Michele D Kassmeier, Koushik Mondal, Victoria L Palmer, Prafulla Raval, Sushil Kumar, Greg A Perry, Dirk K Anderson, Pawel Ciborowski, Sarah Jackson, Yue Xiong and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in The EMBO journal, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed, 1 pooled it
1.7field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 1 synthesis or guideline pooled it, 47 citations in OpenAlex.

  1. Pooled it
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  16. CRL4Science advances · 2020
    Article
  17. Nucleolar localization of RAG1 modulates V(D)J recombination activity.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  18. Article
  19. Article
  20. The emerging role for Cullin 4 family of E3 ligases in tumorigenesis.Biochimica et biophysica acta. Reviews on cancer · 2019
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Michele D KassmeierDepartment of Medical Microbiology and Immunology, Creighton University Medical Center, Omaha, NE, USA.
Koushik Mondal
Victoria L Palmer
Prafulla Raval
Sushil Kumar
Greg A Perry
Dirk K Anderson
Pawel Ciborowski
Sarah Jackson
Yue Xiong
Patrick C Swanson
CHI Health Creighton University Medical Center - Bergan Mercy · USUNC Lineberger Comprehensive Cancer CenterUniversity of Nebraska Medical Center · US

Funding

Therapeutics Core (Page 286)P30MH062261 · NIMH · UNIVERSITY OF NEBRASKA MEDICAL CENTER · PI GENDELMAN, HOWARD E · 2000 to 2021
$37.7M
The ROC-Cullin Family of E3 Ubiquitin LigasesR01GM067113 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI XIONG, YUE · 2003 to 2019
$5.4M
Characterization of V(D)J cleavage and repair complexesR01AI055599 · NIAID · CREIGHTON UNIVERSITY · PI SWANSON, PATRICK C. · 2003 to 2007
$1.1M
Characterization of V(D)J cleavage and repair complexesR56AI055599 · NIAID · CREIGHTON UNIVERSITY · PI SWANSON, PATRICK C. · 2008 to 2009
$650k
Replacing an Animal Resource Facility Cage Washer.G20RR024001 · NCRR · CREIGHTON UNIVERSITY · PI DRESCHER, KRISTEN · 2007 to 2007
$638k
Defining the role of a novel E3 ubiquitin ligase in V(D)J recombinationR56AI091748 · NIAID · CREIGHTON UNIVERSITY · PI SWANSON, PATRICK C. · 2011 to 2011
$361k
Typhoon 9140S10RR027352 · NCRR · CREIGHTON UNIVERSITY · PI SWANSON, PATRICK C. · 2010 to 2010
$143k
NCRR NIH HHS 1S10RR027352NCRR NIH HHS G20 RR024001NCRR NIH HHS G20RR024001NCRR NIH HHS S10 RR027352NIAID NIH HHS AI055599NIAID NIH HHS R01 AI055599NIAID NIH HHS R56 AI055599NIAID NIH HHS R56 AI091748NIAID NIH HHS R56AI091748-01A1NIGMS NIH HHS R01 GM067113NIMH NIH HHS P30 MH062261
6 · The paper itself

Abstract

The N-terminus of full-length RAG1, though dispensable for RAG1/2 cleavage activity, is required for efficient V(D)J recombination. This region supports RING E3 ubiquitin ligase activity in vitro, but whether full-length RAG1 functions as a single subunit or a multi-subunit E3 ligase in vivo is unclear. We show the multi-subunit cullin RING E3 ligase complex VprBP/DDB1/Cul4A/Roc1 associates with full-length RAG1 through VprBP. This complex is assembled into RAG protein-DNA complexes, and supports in-vitro ubiquitylation activity that is insensitive to RAG1 RING domain mutations. Conditional B lineage-specific VprBP disruption arrests B-cell development at the pro-B-to-pre-B cell transition, but this block is bypassed by expressing rearranged immunoglobulin transgenes. Mice with a conditional VprBP disruption show modest reduction of D-J(H) rearrangement, whereas V(H)-DJ(H) and V(κ)-J(κ) rearrangements are severely impaired. D-J(H) coding joints from VprBP-insufficent mice show longer junctional nucleotide insertions and a higher mutation frequency in D and J segments than normal. These data suggest full-length RAG1 recruits a cullin RING E3 ligase complex to ubiquitylate an unknown protein(s) to limit error-prone repair during V(D)J recombination.

Indexed as

V(D)J RecombinationAmino Acid SequenceAnimalsB-LymphocytesCarrier ProteinsHomeodomain ProteinsMiceMolecular Sequence DataProtein BindingProtein Serine-Threonine KinasesTransgenesCarrier ProteinsHomeodomain ProteinsProtein Serine-Threonine KinasesRAG-1 proteinVprBP protein, mouse

Identifiers

PMID22157821
PMCPMC3280554
OpenAlexW1794055572

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.