Evidence map›Paper›PMID 22156527›Full record

ArticleJournal of virology2012

Role of β-catenin and TCF/LEF family members in transcriptional activity of HIV in astrocytes.

Srinivas D Narasipura, Lisa J Henderson, Sidney W Fu, Liang Chen, Fatah Kashanchi, Lena Al-Harthi

Open access · bronzeAbstract read
In one paragraph

Article in Journal of virology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 78 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
78citing papers in PubMed, 1 pooled it
2.3field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

78 citing papers in PubMed, 1 synthesis or guideline pooled it, 96 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Epigenetic mechanisms of HIV and opioid-induced neuropathology: Potential therapies and interventions.Molecular therapy : the journal of the American Society of Gene Therapy · 2025
    Review
  4. Article
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  6. Review
  7. Article
  8. Article
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  11. Review
  12. Article
  13. Article
  14. Review
  15. Article
  16. Review
  17. Article
  18. CD4Journal of virology · 2022
    Article
  19. Article
  20. Review

18 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Srinivas D NarasipuraDepartment of Immunology/Microbiology, Rush University Medical Center, Chicago, Illinois, USA.
Lisa J Henderson
Sidney W Fu
Liang Chen
Fatah Kashanchi
Lena Al-Harthi
Rush University Medical Center · USWashington University in St. Louis · USGeorge Mason University · US

Funding

Interplay between neuroprotective pathways, HIV, and astrocytesR01NS060632 · NINDS · RUSH UNIVERSITY MEDICAL CENTER · PI AL-HARTHI, LENA · 2008 to 2018
$4.9M
DevelopmentalP30AI082151 · NIAID · RUSH UNIVERSITY MEDICAL CENTER · PI CAFFREY, MICHAEL S. · 2009 to 2014
$4.6M
HIV1 INHIBITION USING TAT PEPTIDE DERIVATIVESR01AI043894 · NIAID · UNIV OF MED/DENT OF NJ-NJ MEDICAL SCHOOL · PI KASHANCHI, FATAH · 1999 to 2015
$4.4M
mechanisms of HIV and drug abuse pathogenesis in CNSR01DA033966 · NIDA · RUSH UNIVERSITY MEDICAL CENTER · PI AL-HARTHI, LENA · 2012 to 2016
$1.7M
Effect of chromatin remodelers/modifiers on HIV-1 Tat activated transcriptionR21AI074410 · NIAID · GEORGE WASHINGTON UNIVERSITY · PI KASHANCHI, FATAH · 2009 to 2010
$432k
HIV-1 TAR derived miRNA: Implications for Latency and PathogenesisR21AI078859 · NIAID · GEORGE WASHINGTON UNIVERSITY · PI KASHANCHI, FATAH · 2009 to 2010
$400k
Virus/host interaction in HIV neuropathogenesisF31NS071999 · NINDS · RUSH UNIVERSITY MEDICAL CENTER · PI HENDERSON, LISA JANE · 2010 to 2012
$53k
NIAID NIH HHS AI043894NIAID NIH HHS AI074410-01NIAID NIH HHS AI078859NIAID NIH HHS P30 AI 082151NIAID NIH HHS P30 AI082151NIAID NIH HHS R01 AI043894NIAID NIH HHS R21 AI074410NIAID NIH HHS R21 AI078859NIDA NIH HHS R01 DA033966NINDS NIH HHS F31 NS071999NINDS NIH HHS R01 NS060632
6 · The paper itself

Abstract

The Wnt/β-catenin pathway is involved in diverse cell functions governing development and disease. β-Catenin, a central mediator of this pathway, binds to members of the TCF/LEF family of transcription factors to modulate hundreds of genes. Active Wnt/β-catenin/TCF-4 signaling plays a significant role in repression of HIV-1 replication in multiple cell targets, including astrocytes. To determine the mechanism by which active β-catenin/TCF-4 leads to inhibition of HIV replication, we knocked down β-catenin or TCF/LEF members in primary astrocytes and astrocytomas transiently transfected with an HIV long terminal repeat (LTR)-luciferase reporter that contained an integrated copy of the HIV LTR-luciferase construct. Knockdown of either β-catenin or TCF-4 induced LTR activity by 2- to 3-fold under both the episomal and integrated conditions. This knockdown also increased presence of serine 2-phosphorylated RNA polymerase II (Pol II) on the HIV LTR as well as enhanced its processivity. Knockdown of β-catenin/TCF-4 also impacted tethering of other transcription factors on the HIV promoter. Specifically, knockdown of TCF-4 enhanced binding of C/EBPβ, C/EBPδ, and NF-κB to the HIV LTR, while β-catenin knockdown increased binding of C/EBPβ and C/EBPδ but had no effect on NF-κB. Approximately 150 genes in astrocytes were impacted by β-catenin knockdown, including genes involved in inflammation/immunity, uptake/transport, vesicular transport/exocytosis, apoptosis/cellular stress, and cytoskeleton/trafficking. These findings indicate that modulation of the β-catenin/TCF-4 axis impacts the basal level of HIV transcription in astrocytes, which may drive low level/persistent HIV in astrocytes that can contribute to ongoing neuroinflammation, and this axis also has profound effects on astrocyte biology.

Indexed as

Transcriptional ActivationAstrocytesBasic Helix-Loop-Helix Leucine Zipper Transcription Factorsbeta CateninCell Line, TumorCells, CulturedGene Expression Regulation, ViralHIV-1HIV InfectionsHIV Long Terminal RepeatHumansMolecular Sequence DataSignal TransductionTranscription Factor 4Transcription FactorsBasic Helix-Loop-Helix Leucine Zipper Transcription Factorsbeta CateninTCF4 protein, humanTranscription Factor 4Transcription Factors

Identifiers

PMID22156527
PMCPMC3302377
OpenAlexW2054343189

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.