Evidence map›Paper›PMID 22156394›Full record

ArticleJournal of bacteriology2012

Complete resequencing and reannotation of the Lactobacillus plantarum WCFS1 genome.

Roland J Siezen, Christof Francke, Bernadet Renckens, Jos Boekhorst, Michiel Wels, Michiel Kleerebezem, Sacha A F T van Hijum

Abstract read
In one paragraph

Article in Journal of bacteriology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 65 papers.

0numbers the graph read from it
0cells of the map it votes in
65citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

65 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. The biocontrol agentApplied and environmental microbiology · 2023
    Article
  9. Article
  10. Metallobiology of Lactobacillaceae in the gut microbiome.Journal of inorganic biochemistry · 2023
    Review
  11. Article
  12. Calcium DeterminesApplied and environmental microbiology · 2022
    Article
  13. The Impacts ofMicroorganisms · 2022
    Review
  14. Nitric oxide-secreting probiotics as sustainable bio-cleaners for reverse osmosis membrane systems.Environmental science and pollution research international · 2022
    Review
  15. Article
  16. Comparative Genomics ofFrontiers in microbiology · 2022
    Article
  17. Health-Promoting Role ofMicroorganisms · 2021
    Review
  18. Article
  19. Article
  20. Article

5 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Roland J SiezenTI Food and Nutrition, Wageningen, The Netherlands. r.siezen@cmbi.ru.nl
Christof Francke
Bernadet Renckens
Jos Boekhorst
Michiel Wels
Michiel Kleerebezem
Sacha A F T van Hijum

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

There is growing interest in the beneficial effects of Lactobacillus plantarum on human health. The genome of L. plantarum WCFS1, first sequenced in 2001, was resequenced using Solexa technology. We identified 116 nucleotide corrections and improved function prediction for nearly 1,200 proteins, with a focus on metabolic functions and cell surface-associated proteins.

Indexed as

Genome, BacterialGene Expression Regulation, BacterialLactiplantibacillus plantarumMolecular Sequence AnnotationMolecular Sequence Data

Identifiers

PMID22156394
PMCPMC3256602

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.