Evidence map›Paper›PMID 22156057›Full record

ArticleNucleic acids research2012

Stringency of start codon selection modulates autoregulation of translation initiation factor eIF5.

Gary Loughran, Matthew S Sachs, John F Atkins, Ivaylo P Ivanov

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 97 papers.

0numbers the graph read from it
0cells of the map it votes in
97citing papers in PubMed
3.6field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

97 citing papers in PubMed, 127 citations in OpenAlex.

  1. Article
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  10. Review
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  12. eIF1 and eIF5 dynamically control translation start site fidelity.Nature structural & molecular biology · 2025
    Article
  13. Article
  14. Review
  15. Review
  16. Tiny but mighty: Diverse functions of uORFs that regulate gene expression.Computational and structural biotechnology journal · 2024
    Review
  17. Article
  18. Article
  19. Article
  20. Article

37 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 2 countries.

Gary LoughranBioSciences Institute, University College Cork, Ireland.
Matthew S Sachs
John F Atkins
Ivaylo P Ivanov
University of Utah · USTexas A&M University · USUniversity College Cork · IE

Funding

CONTROL OF ARG-2 GENE EXPRESSION IN NEUROSPORAR01GM047498 · NIGMS · TEXAS A&M UNIVERSITY · PI SACHS, MATTHEW STEVEN · 1997 to 2009
$2.8M
The range of recoding and analysis of a 50 nt bypass to probe ribosomal functionR01GM079523 · NIGMS · UNIVERSITY OF UTAH · PI ATKINS, JOHN F. · 2007 to 2010
$1.3M
NIGMS NIH HHS R01 GM079523NIGMS NIH HHS R01 GM47498
6 · The paper itself

Abstract

An AUG in an optimal nucleotide context is the preferred translation initiation site in eukaryotic cells. Interactions among translation initiation factors, including eIF1 and eIF5, govern start codon selection. Experiments described here showed that high intracellular eIF5 levels reduced the stringency of start codon selection in human cells. In contrast, high intracellular eIF1 levels increased stringency. High levels of eIF5 induced translation of inhibitory upstream open reading frames (uORFs) in eIF5 mRNA that initiate with AUG codons in conserved poor contexts. This resulted in reduced translation from the downstream eIF5 start codon, indicating that eIF5 autoregulates its own synthesis. As with eIF1, which is also autoregulated through translation initiation, features contributing to eIF5 autoregulation show deep evolutionary conservation. The results obtained provide the basis for a model in which auto- and cross-regulation of eIF5 and eIF1 translation establish a regulatory feedback loop that would stabilize the stringency of start codon selection.

Indexed as

Codon, InitiatorPeptide Chain Initiation, TranslationalBase SequenceConserved SequenceEukaryotic Initiation Factor-1Eukaryotic Translation Initiation Factor 5AHEK293 CellsHomeostasisHumansPeptide Initiation FactorsRNA-Binding ProteinsRNA, MessengerCodon, InitiatorEukaryotic Initiation Factor-1Eukaryotic Translation Initiation Factor 5APeptide Initiation FactorsRNA-Binding ProteinsRNA, Messenger

Identifiers

PMID22156057
PMCPMC3326321
OpenAlexW2128085251

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.