Evidence map›Paper›PMID 22155582›Full record

ArticleExperimental eye research2012

Composition and proteolytic processing of corneal deposits associated with mutations in the TGFBI gene.

Henrik Karring, Kasper Runager, Ida B Thøgersen, Gordon K Klintworth, Peter Højrup, Jan J Enghild

Open access · greenAbstract read
In one paragraph

Article in Experimental eye research, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
2.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 55 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Review
  5. Clusterin, other extracellular chaperones, and eye disease.Progress in retinal and eye research · 2022
    Review
  6. Molecular mechanisms of amyloid disaggregation.Journal of advanced research · 2022
    Review
  7. Article
  8. Article
  9. Amyloid assembly and disassembly.Journal of cell science · 2018
    Review
  10. Review
  11. Article
  12. Article
  13. Macrophage TGF-International journal of clinical medicine · 2016
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Henrik KarringInstitute of Chemical Engineering, Biotechnology and Environmental Technology, Faculty of Engineering, University of Southern Denmark, Niels Bohrs Allé 1, DK-5230 Odense M, Denmark. hka@kbm.sdu.dk
Kasper Runager
Ida B Thøgersen
Gordon K Klintworth
Peter Højrup
Jan J Enghild
Aarhus University · DKUniversity of Southern Denmark · DKDuke University Hospital · US

Funding

BIGH3 WILD TYPE AND MUTANT PROTEINSR01EY012712 · NEI · DUKE UNIVERSITY · PI KLINTWORTH, GORDON KENNETH · 1999 to 2011
$2.4M
NEI NIH HHS R01 EY012712
6 · The paper itself

Abstract

Different types of granular corneal dystrophy (GCD) and lattice corneal dystrophy (LCD) are associated with mutations in the transforming growth factor beta induced gene (TGFBI). These dystrophies are characterized by the formation of non-amyloid granular deposits (GCDs) and amyloid (LCD type 1 and its variants) in the cornea. Typical corneal non-amyloid deposits from GCD type 2 (R124H), amyloid from a variant of LCD type 1 (V624M) and disease-free tissue controls were procured by laser capture microdissection and analyzed by tandem mass spectrometry. Label-free quantitative comparisons of deposits and controls suggested that the non-amyloid sample (R124H) specifically accumulated transforming growth factor beta induced protein (TGFBIp/keratoepithelin/βig-h3), serum amyloid P-component, clusterin, type III collagen, keratin 3, and histone H3-like protein. The amyloid (V624M) similarly accumulated serum amyloid P-component and clusterin but also a C-terminal fragment of TGFBIp containing residues Y571-R588 derived from the fourth fasciclin-1 domain (FAS1-4), apolipoprotein E and apolipoprotein A-IV. Significantly, analyses of the amyloid sample also revealed the presence of the serine protease Htr (High-temperature requirement) A1 and a number of proteolytic cleavage sites in the FAS1-4 domain of TGFBIp. These cleavage sites were consistent with the ligand binding and proteolytic activity of HtrA1 suggesting that it plays a role in the proteolytic processing of the amyloidogenic FAS1-4 domain. Taken together, the data suggest that the amyloidogenic-prone region of the fourth FAS1 domain of TGFBIp encompasses the Y571-R588 peptide and that HtrA1 is involved in the proteolytic processing of TGFBIp-derived amyloid in vivo.

Indexed as

MutationAmyloidosis, FamilialApolipoproteinsbetaIG-H3 ProteinChromatography, LiquidClusterinCollagen Type IIICorneal Dystrophies, HereditaryCorneal StromaExtracellular Matrix ProteinsHumansKeratin-3Laser Capture MicrodissectionPlaque, AmyloidProteolysisProteomicsApolipoproteinsbetaIG-H3 ProteinCLU protein, humanClusterinCollagen Type IIIExtracellular Matrix ProteinsKeratin-3KRT3 protein, humanSerum Amyloid P-ComponentTransforming Growth Factor beta

Identifiers

PMID22155582
PMCPMC3311163
OpenAlexW2127419667

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.