Evidence map›Paper›PMID 22148953›Full record

ArticleJournal of proteome research2012

Delineating diseases by IMS-MS profiling of serum N-linked glycans.

Dragan Isailovic, Manolo D Plasencia, Maissa M Gaye, Sarah T Stokes, Ruwan T Kurulugama, Vitara Pungpapong, Min Zhang, Zuzana Kyselova, Radoslav Goldman, Yehia Mechref and 2 more

Abstract read
In one paragraph

Article in Journal of proteome research, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed.

  1. High-Throughput Glycomic Methods.Chemical reviews · 2022
    Review
  2. Review
  3. Review
  4. Cryogenic Vibrational Spectroscopy Provides Unique Fingerprints for Glycan Identification.Journal of the American Society for Mass Spectrometry · 2017
    Article
  5. Article
  6. Article
  7. Review
  8. Review
  9. Article
  10. Article
  11. Review
  12. Populations of metal-glycan structures influence MS fragmentation patterns.Journal of the American Society for Mass Spectrometry · 2015
    Article
  13. Article
  14. Review
  15. Review
  16. Structural glycomic analyses at high sensitivity: a decade of progress.Annual review of analytical chemistry (Palo Alto, Calif.) · 2013
    Review
  17. Article
  18. Mannose7 glycan isomer characterization by IMS-MS/MS analysis.Journal of the American Society for Mass Spectrometry · 2012
    Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Dragan IsailovicDepartment of Chemistry, Indiana University , Bloomington, Indiana 47405, United States.
Manolo D Plasencia
Maissa M Gaye
Sarah T Stokes
Ruwan T Kurulugama
Vitara Pungpapong
Min Zhang
Zuzana Kyselova
Radoslav Goldman
Yehia Mechref
Milos V Novotny
David E Clemmer

Funding

Glycans in Hepatocellular CarcinomaR01CA135069 · NCI · GEORGETOWN UNIVERSITY · PI GOLDMAN, RADOSLAV · 2009 to 2019
$4.1M
TRAININGP41RR018942 · NCRR · TRUSTEES OF INDIANA UNIVERSITY · PI REILLY, JAMES P. · 2005 to 2008
$3.9M
Proteomic Analysis of Serum in Liver CancerR01CA115625 · NCI · GEORGETOWN UNIVERSITY · PI GOLDMAN, RADOSLAV · 2007 to 2010
$1.4M
Optimization of enrichment for MALDI TOF/TOF identification of cancer biomarkersR03CA119288 · NCI · GEORGETOWN UNIVERSITY · PI GOLDMAN, RADOSLAV · 2006 to 2007
$153k
NCI NIH HHS R01 CA115625NCI NIH HHS R01 CA135069NCI NIH HHS R03 CA119288NCI NIH HHS R03CA119288NCRR NIH HHS P41 RR018942NCRR NIH HHS RR018942
6 · The paper itself

Abstract

Altered branching and aberrant expression of N-linked glycans is known to be associated with disease states such as cancer. However, the complexity of determining such variations hinders the development of specific glycomic approaches for assessing disease states. Here, we examine a combination of ion mobility spectrometry (IMS) and mass spectrometry (MS) measurements, with principal component analysis (PCA) for characterizing serum N-linked glycans from 81 individuals: 28 with cirrhosis of the liver, 25 with liver cancer, and 28 apparently healthy. Supervised PCA of combined ion-mobility profiles for several, to as many as 10 different mass-to-charge ratios for glycan ions, improves the delineation of diseased states. This extends an earlier study [J. Proteome Res.2008, 7, 1109-1117] of isomers associated with a single glycan (S(1)H(5)N(4)) in which PCA analysis of the IMS profiles appeared to differentiate the liver cancer group from the other samples. Although performed on a limited number of test subjects, the combination of IMS-MS for different combinations of ions and multivariate PCA analysis shows promise for characterizing disease states.

Indexed as

AdolescentAdultComputational BiologyGlycoproteinsHumansLiver CirrhosisLiver NeoplasmsPolysaccharidesPrincipal Component AnalysisSpectrometry, Mass, Electrospray IonizationStatistics, NonparametricTandem Mass SpectrometryGlycoproteinsPolysaccharides

Identifiers

PMID22148953
PMCPMC3337085

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.